单株行为预测了肠道微生物群对环境pH和度的反应
Katharine M Ng1,2, Sagar Pannu1, Sijie Liu2
1Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada.
mBio
|July 11, 2023
概括
肠道细菌的生存取决于环境因素,如pH和度. 这项研究确定了关键基因,并表明体外结果预测了体内肠道微生物组的变化.
科学领域:
- 微生物学 微生物学
- 系统生物学 系统生物学
- 计算生物学 计算生物学
背景情况:
- 肠道微生物组的组成随着疾病或药物引起的环境变化 (pH,度) 而变化.
- 在这些条件下预测物种耐受性和社区影响仍然具有挑战性.
研究的目的:
- 评估人类肠道细菌在不同pH值和度的体外生长.
- 为了确定赋予应激耐受性的基因和途径.
- 评估体外发现对复杂群体和体内模型的概括性.
主要方法:
- 在各种pH和度条件下培养了92种人类肠道细菌菌株.
- 分析压力反应基因,并使用机器学习进行预测分析.
- 验证 in vitro复杂群体和 in vivo小鼠模型中的发现.
主要成果:
- 对极端pH/度的生长耐受性与应激反应基因相关,但也涉及新的途径.
- 机器学习确定了对酸性和透性应激耐受性的预测基因/子系统.
- 在体外应激耐受性准确地预测了复杂社区和体内的细菌存活率.
结论:
- 在体外应激耐受性数据是可概括的,并预测在体内微生物社区的动态.
- 物理环境因素 (pH,度) 可能比物种间相互作用更有影响.
- 纳入物理测量对于预测微生物群对肠道干扰的反应至关重要.
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