对微生物酸脱酶的二酸的水解脱的结构洞察力
Anna N Khusnutdinova1,2,3, Khorcheska A Batyrova1,2, Greg Brown1
1Department of Chemical Engineering and Applied Chemistry, University of Toronto, ON, Canada.
微生物酸脱酶 (FADs) 可以脱二酸,产生氧酸盐. 结构和计算分析揭示了FAD基质杂交和潜在的生物催化和生物修复应用的催化机制的洞察力.
科学领域:
- 生物化学 生物化学
- 酶学 是一种酶学.
- 结构生物学 结构生物学
背景情况:
- -碳键异常强,但乙酸脱酶 (FADs) 可以分裂它们.
- 最近的发现表明,一些FAD可以接受更大的基板,这表明其功能更广泛.
研究的目的:
- 为了研究微生物FADs的基质乱交.
- 探索FADs对多化有机酸的脱化.
- 阐明FAD对二乙酸活性的催化机制和结构基础.
主要方法:
- 对八种纯化的FAD进行酶性选,以对抗二乙酸.
- 使用液体染色学-质谱学进行产品识别.
- 确定晶体结构 (apo 和中间状态).
- 基于结构的位点导向突变发生.
- 计算分析包括二分体结构和蛋白质-带对接.
主要成果:
- 在8种FAD中,有3种对二乙酸有显著的活性,产生氧酸.
- 水晶结构揭示了活性部位的细节和一种催化中间体.
- 突变性证实了关键活性部位残留在脱过程中的作用.
- 计算建模建议二乙酸的两步脱机制.
结论:
- 微生物的FADs表现出基质的乱交性,除二乙酸盐到氧酸盐.
- 提供了对FAD的结构和机制见解.
- FADs是合成化学和化物的生物修复的有希望的生物催化剂.
更多相关视频
04:32Extraction of Cofactor F420 for Analysis of Polyglutamate Tail Length from Methanogenic Pure Cultures and Environmental Samples
Published on: October 14, 2021
12:08Monitoring the Reductive and Oxidative Half-Reactions of a Flavin-Dependent Monooxygenase using Stopped-Flow Spectrophotometry
Published on: March 18, 2012
相关概念视频
Acid Halides to Carboxylic Acids: Hydrolysis
As shown below, the mechanism involves a nucleophilic attack by water at the carbonyl carbon to form a tetrahedral intermediate. This is followed by the reformation of the carbon–oxygen π bond along with the departure of a halide ion. A final proton transfer step yields carboxylic...
ortho–para-Directing Deactivators: Halogens
Electrophilic Aromatic Substitution: Fluorination and Iodination of Benzene
Acid-Catalyzed α-Halogenation of Aldehydes and Ketones
In the first step of the mechanism, the acid protonates the carbonyl oxygen resulting in a resonance-stabilized cation, which subsequently loses an α-hydrogen to form an enol tautomer. The C=C bond in an enol is highly nucleophilic because of the electron-donating nature of the –OH group. Consequently, the double bond attacks an electrophilic halogen to form a...
Amides to Carboxylic Acids: Hydrolysis
Acid-catalyzed hydrolysis:
Hydrolysis of amides under acidic conditions yields carboxylic acids. Since the reaction occurs slowly, hydrolysis requires the conditions of heat.
The mechanism begins with the protonation of the carbonyl oxygen by the acid catalyst. The protonation makes the amide carbonyl carbon more...
Esters to Carboxylic Acids: Acid-Catalyzed Hydrolysis
During hydrolysis, the ester is first activated towards nucleophilic attack through the protonation of the carboxyl oxygen atom by the acid catalyst. The protonation makes the ester carbonyl carbon more electrophilic. In the next step, water acts as a nucleophile and adds to the...
