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相关概念视频

Alternative RNA Splicing02:18

Alternative RNA Splicing

21.4K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
21.4K
RNA Splicing01:32

RNA Splicing

56.5K
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.5K
Exon Recombination02:32

Exon Recombination

3.6K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon...
3.6K
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

6.0K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
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Pre-mRNA Processing: RNA Splicing01:36

Pre-mRNA Processing: RNA Splicing

5.3K
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Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

10.9K
Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
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相关实验视频

Updated: Jul 23, 2025

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
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Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models

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为蛋白质重复构建替代拼接和进化意识的序列结构地图.

Antoine Szatkownik1, Diego Javier Zea2, Hugues Richard1

  • 1Sorbonne Université, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 75005 Paris, France; Bioinformatics Unit, Genome Competence Center (MF1), Robert Koch Institute, 13353 Berlin, Germany.

Journal of structural biology
|July 15, 2023
PubMed
概括

我们开发了ASPRING来识别替代拼接的蛋白质重复,揭示了超过5000个修复的重复,调节蛋白质相互作用,并提供新的治疗点.

关键词:
阿尔法折叠模型的模型另一个替代拼接.蛋白质的进化是如何发生的蛋白质相互作用 蛋白质相互作用蛋白质的重复过程

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Identification of Alternative Splicing and Polyadenylation in RNA-seq Data
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Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues
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Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues

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相关实验视频

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09:58

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Identification of Alternative Splicing and Polyadenylation in RNA-seq Data
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Identification of Alternative Splicing and Polyadenylation in RNA-seq Data

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Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues
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科学领域:

  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.
  • 结构生物学 结构生物学

背景情况:

  • 蛋白质的替代拼接重复细调蛋白质相互作用网络.
  • 了解重复多样性对于蛋白质功能至关重要.
  • 现有的方法缺乏对替代拼接重复的全面分析.

研究的目的:

  • 开发一种可靠的方法 (ASPRING) 来识别替代拼接的蛋白质重复.
  • 为了将蛋白质重复序列映射到使用进化图的3D结构.
  • 分析这些重复在蛋白质相互作用中的作用.

主要方法:

  • 开发了ASPRING,一种用于识别替代拼接重复的新方法.
  • 使用了用于序列结构映射的替代拼接意识的等级图形.
  • 在多种物种中应用了严格的基于序列的相似性标准.
  • 执行联合序列和结构分析以确定特异性特征.

主要成果:

  • 在人类基因和正确基因中发现了超过5000个进化保存的重复.
  • 在这些重复中,特征特异性确定序列签名.
  • 评估了替代拼接重复对蛋白质相互作用的影响.
  • 在调节蛋白相互作用方面,已证明广泛的替代性重复使用.

结论:

  • 蛋白重复的替代拼接是一种广泛的调节蛋白相互作用的机制.
  • ASPRING为发现和分析这些重复提供了一个强大的工具.
  • 这些发现为治疗重复介导相互作用开辟了新的途径.