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相关概念视频

Histone Modification02:32

Histone Modification

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The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
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The Nucleosome Core Particle01:12

The Nucleosome Core Particle

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Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
953
Heterochromatin02:38

Heterochromatin

14.0K
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
14.0K
Histone Variants at the Centromere02:30

Histone Variants at the Centromere

4.4K
Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3...
4.4K
Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

8.3K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
8.3K
The Nucleosome01:19

The Nucleosome

1.7K
Human DNA is almost two meters long. However, it is compressed inside a tiny nucleus measuring only a few microns in diameter. To make this degree of compaction possible, DNA is organized into several sequential levels so that it can fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
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第I类组胺脱乙酶复合物:结构和功能相关物.

Xiao Wang1,2, Yannan Wang1, Simiao Liu3

  • 1Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China.

Proceedings of the National Academy of Sciences of the United States of America
|July 17, 2023
PubMed
概括

希索撒卡罗梅西斯贝Clr6S复合物,一个组分素脱乙酶,在结构上使用冷EM进行了表征. 它的活性部位和与核体的相互作用揭示了其催化功能至关重要的灵活性.

关键词:
在HDAC的基础上,HDAC是低温电磁波冷却器 (Cryo-EM) 是一个非常好的方法.脱乙酶的使用方法核子组中的核子后翻译修改后的翻译修改

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Single-Step Enrichment of a TAP-Tagged Histone Deacetylase of the Filamentous Fungus Aspergillus nidulans for Enzymatic Activity Assay
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科学领域:

  • 分子生物学分子生物学
  • 结构生物学 结构生物学
  • 生物化学 生物化学

背景情况:

  • 这种Schizosaccharomyces pombe Clr6S复合物是一种I类的组胺脱乙酸酶.
  • 它作为一种依赖的酶起作用,将乙基从组素尾部去除.
  • 基因失乙化对基因调节起着至关重要的作用.

研究的目的:

  • 通过冷电子显微镜 (cryo-EM) 单独确定Clr6S复合物的结构.
  • 为了阐明Clr6S复合物的冷-EM结构与核细胞组的复合.
  • 了解Clr6S催化活性和基质相互作用的结构基础.

主要方法:

  • 使用冷电子显微镜 (cryo-EM) 来获得高分辨率的结构.
  • 仅仅确定了Clr6S的结构.
  • 还绘制了Clr6S与核细胞组合的结构.

主要成果:

  • 接近原子分辨率的冷EM结构揭示了Clr6S的活性中心.
  • 关键的催化特性包括协调的水分子和基质定位循环.
  • Clr6S-核细胞组复合图显示了多个相互作用点和显著的相对运动,表明灵活性.

结论:

  • 发现的活性部位为Cr6S的催化机制提供了洞察力.
  • 在Clr6S核酶组合体中观察到的灵活性可能对酶的功能至关重要.
  • 这些发现有助于理解Schizosaccharomyces pombe中的组素脱乙烯化.