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在人类胎盘的DNA甲基化阵列研究中,应用epiphenotyping方法
Almas Khan1, Amy M Inkster1, Maria S Peñaherrera1
1BC Children's Hospital Research Institute (BCCHR).
Research square
|July 18, 2023
概括
这项研究验证了使用DNA甲基化数据来推断胎盘表型,如妊娠年龄和祖先. 这些"epiphenotypes"有助于在不同研究和样本中标准化分析.
科学领域:
- 表观遗传学和基因组学
- 胎盘生物学 胎盘生物学
- 围产期发育 围产期发展
背景情况:
- 胎盘的全基因组DNA甲基化 (DNAme) 分析对于理解子宫中的暴露和胎儿发育至关重要.
- DNAme数据中的技术和生物变异需要强大的分析方法来获得可靠的结果.
- 使用DNAme来归因表型变量,提供了一种标准化和比较跨队列数据的方法.
结论:
- 队列,技术批量,细胞类型比例,种族,遗传祖先和性别是胎盘DNAme分析的关键因素.
- 从DNAme数据中估计表现型可提供临床数据的独立验证.
- 显现型定型能够对不同数据集中的变量进行可靠的比较,从而增强了全表观基因组相关性研究.
相关概念视频
Epigenetic Regulation
Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
Genomic Imprinting and Inheritance
Diploid organisms inherit genetic material through chromosomes from both parents. Copies of the same gene are known as alleles. In most cases, both alleles are simultaneously expressed and allow various cellular processes to function optimally. If one of the alleles is missing or mutated, the expression of the other allele can compensate; however, this is not true for all genes.
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
DNA Microarrays
Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
Epigenetic Regulation
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
X-chromosome...

