相关实验视频
Updated: Jul 21, 2025

06:48
CD Spectroscopy to Study DNA-Protein Interactions
Published on: February 10, 2022
6.8K
转录因子超级家族中的不对称二分化是由与DNA的全相互作用促进的
Abdul Kareem Mohideen Patel1,2,3,4, Pierre Vilela1,2,3,4, Tajith Baba Shaik1,2,3,4
1IGBMC (Institute of Genetics and of Molecular and Cellular Biology), Centre for Integrative Biology (CBI), Illkirch, France.
Nucleic acids research
|July 28, 2023
概括
与雌激素相关的受体 (ERRs) 使用DNA作为驱动器进行二元化,形成一个新的不对称接口. 这种祖先的二分化机制后来在进化过程中在其他类固醇受体 (SRs) 中得到了修改.
科学领域:
- 分子生物学分子生物学
- 进化生物学 进化生物学
- 结构生物学 结构生物学
背景情况:
- 转录因子,如核受体,通过DNA相互作用调节基因表达.
- 受体二分化增强了DNA结合特异性和合作性,扩大了基因范围.
- 类固醇受体 (SRs) 从单质结合演变为二次结合,结合于平行组位点.
研究的目的:
- 研究在类固醇受体 (SRs) 中结合DNA的进化起源.
- 了解从单体结合点过渡到二元结合点的过程.
- 专注于与雌激素相关的受体 (ERRs) 作为SRs的近亲.
主要方法:
- 结晶学研究以确定结构细节.
- 生物物理分析以评估分子相互作用.
- 遗传学研究来追踪进化的历史.
主要成果:
- 确定了 ERR DNA 结合域与一个 palindromic 响应元素 (RE) 结合的结构.
- 揭示了ERR二分化机制,由DNA全质地驱动.
- 在ERR中发现了一个新的,扩展的不对称二元化区域 (KR-box).
- 遗传学分析表明这种不对称性是一种祖先的特征.
结论:
- 通过KR-box,DNA作为ERR二分化的一种全质驱动剂.
- ERR二分化不对称性是SRs的一个祖先特征.
- 这种祖先机制在其他SRs的进化过程中得到了修改.
相关概念视频
Cooperative Binding of Transcription Regulators
6.5K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
6.5K
Cooperative Allosteric Transitions
7.9K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
7.9K
Co-activators and Co-repressors
7.4K
Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
7.4K
Eukaryotic Transcription Activators
11.1K
Transcription activators are proteins that promote the transcription of genes from DNA to RNA. In most cases, these proteins contain two separate domains ‒ a domain that binds to DNA and a domain for activating transcription; however, in some cases, a single domain is responsible for both binding and activation of transcription, as seen in the glucocorticoid receptor and MyoD.
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
11.1K
Transcription Factors
76.1K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
76.1K
RNA Polymerase II Accessory Proteins
9.2K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.2K

