可转移元素与它们的主体基因组之间的进化动态:抑制和逃脱机制
Matthew A Lawlor1, Christopher E Ellison1
1Rutgers University, 604 Allison Rd, Piscataway, NJ 08854, USA.
Current opinion in genetics & development
|July 30, 2023
概括
可转移元素 (TE) 可以通过表观遗传变化和RNA损伤损害宿主细胞. 然而,宿主防御机制,如piRNA路径和TEs.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 进化生物学 进化生物学
背景情况:
- 可转移元素 (TE) 是在真核生物基因组中普遍存在的移动遗传序列.
- 它们的持久性表明它们与宿主基因组的复杂相互作用,包括有益的,中性的和有害的影响.
- 了解这些相互作用对于理解基因组进化和宿主-病原体动态至关重要.
研究的目的:
- 审查最近在理解可转移元素 (TE) 在元动物物种中的有害影响方面取得的进展.
- 讨论宿主防御机制,使TEs沉默.
- 总结了 TE 使用的新型规避策略.
主要方法:
- 最近科学出版物的文献综述.
- 专注于表观遗传效应和TE衍生的RNAs.
- 对宿主沉默通路 (piRNA,APOBEC3,ZFP基因) 和TE对抗策略的分析.
主要成果:
- TE插入可以通过表观遗传变化和TE衍生的RNA引起细胞损伤.
- 主体基因组利用像piRNA,APOBEC3和ZFP基因这样的途径来沉默TE.
- 试验体已经发展出了反策略,包括利用Y染色体和阻断宿主沉默因子.
结论:
- 试验体和宿主基因组参与了一个动态的进化军备竞赛.
- 表观遗传调节和RNA干扰是这种相互作用的关键战场.
- 试管婴儿在逃避宿主防御方面表现出了显著的适应能力,影响了基因组的稳定性和进化.
相关概念视频
Overview of Transposition and Recombination
15.7K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
15.7K
DNA-only Transposons
14.6K
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
The donor site from where the transposon is excised is either degraded or...
14.6K
Transposons
59
Transposons, or "jumping genes," are small mobile genetic elements (MGEs) that range from 700 to 40,000 base pairs in length. They are found in all organisms and can move within the same chromosome or transfer to different chromosomes. In some cases, transposons can also jump between different host DNA molecules, such as plasmids or viruses, contributing to genetic variability.Barbara McClintock first discovered these mobile genetic elements in the 1940s while studying maize genetics, and she...
59
Non-LTR Retrotransposons
11.6K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
11.6K
LTR Retrotransposons
17.6K
LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
17.6K
Retroviruses
12.4K
Retroviruses and retrotransposons both insert copies of their genetic elements into the genome of the host cell. Thus, the viral genes are passed on when the host genome is replicated or translated. A typical retroviral DNA sequence contains 3-4 genes that encode the different proteins required for its structural assembly and function as a molecular parasite. This DNA is transcribed into a single mRNA, which is very similar in structure to conventional mRNAs, i.e., it is capped at the 5’...
12.4K


