重复多态性是青光眼和结直肠癌的最大遗传风险基因
Ronen E Mukamel1, Robert E Handsaker2, Maxwell A Sherman3
1Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA; Center for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
可变数组重复 (VNTR) 显著影响人类健康和基因调节. 这项研究发现了许多影响复杂特征和疾病风险的VNTR,突出了它们以前被低估的作用.
科学领域:
- 基因组学
- 人类遗传学
- 分子生物学
背景情况:
- 人类基因组包含具有可变数量的并列重复 (VNTR) 的区域,导致个体之间的长度差异.
- 这些基因组变异的表型后果,特别是VNTR,在很大程度上仍未在全基因组范围内表征.
研究的目的:
- 研究VNTRs对全基因组的表型影响.
- 确定与复杂特征和基因调节相关的特定VNTR.
主要方法:
- 在大型队列中使用统计归算来估计9561个自体VNTR位点的长度 (英国生物库和GTEx).
- 进行了关联和统计精细映射分析,以确定影响复杂特征和基因表达/拼接的VNTR.
主要成果:
- 在英国生物库队列中,58个VNTR被确定为影响复杂特征.
- 其中18个VNTR被发现调节了附近基因的表达或拼接.
- 在TMCO1和EIF3H中非编码的VNTR显示出对眼和结直肠癌风险的显著贡献,风险变化超过2倍.
结论:
- 在人类健康方面,VNTR扮演着重要而未被认可的角色.
- 非编码的VNTR是影响复杂特征和基因调节的遗传变异的重要贡献者.
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