在MALAT1 lncRNA中识别与核和核胺相互作用的G-四重复结构
Arpita Ghosh1,2, Satya Prakash Pandey1,2, Dheeraj Chandra Joshi1,2
1CSIR-Institute of Genomics & Integrative Biology, Mathura Road, Delhi 110025, India.
Nucleic acids research
|August 9, 2023
概括
这项研究确定了MALAT1中的新型RNA G四复合体,这是一个长非编码RNA. 这些结构结合了核蛋白核和核胺,影响了它们的核斑点定位.
科学领域:
- 分子生物学分子生物学
- 在RNA生物学,RNA生物学.
- 遗传学 是一个遗传学.
背景情况:
- 长非编码RNAs (lncRNAs),如MALAT1,是细胞过程的关键调节者.
- 核保留的 lncRNA 在转录,拼接和染色质组织中发挥作用.
研究的目的:
- 为了研究MALAT1 lncRNA中RNA G-四复合体 (rG4s) 的存在和功能.
- 识别与MALAT1 rG4结构结合的蛋白质,并确定它们在蛋白质定位中的作用.
主要方法:
- 针对rG4域的RNA拉下测试,然后进行质谱测试.
- RNA免疫沉 (RIP) 和细胞成像技术.
- 在体外生物物理研究中使用截断的蛋白质.
主要成果:
- 在MALAT1.1的3'区域中发现了三个保存和稳定的rG4结构.
- 发现核素 (NCL) 和核胺 (NPM) 特别结合MALAT1rG4s.
- 破坏MALAT1 rG4s损害了NCL和NPM到核斑点的局部化.
结论:
- 马拉特1有功能性rG4结构,可以作为NCL和NPM的结合点.
- 这些rG4对于NCL和NPM在核斑点内的适当定位至关重要.
- 这些发现揭示了一种涉及lncRNA结构和蛋白质核组织的新型调节机制.
相关概念视频
lncRNA - Long Non-coding RNAs
8.6K
In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
8.6K
The Nucleolus
8.9K
The nucleolus is the most prominent substructure of the nucleus. When it was first discovered, it was considered to be an isolated organelle that forms fibrils and granules. In 1931, the relationship between the nucleolus and chromosomes was first described by Heitz. He observed that the appearance and size of nucleolus varies depending on the stage of the cell cycle. He also noticed constricted regions on different chromosomes clustered together at definite cell cycle stages. These regions,...
8.9K
Nuclear Localization Signals and Import
5.8K
Proteins targeted to the nucleus carry short stretches of amino acid sequences called the nuclear localization signal or NLS. Classical nuclear localization signals are of two types: monopartite and bipartite NLS. Monopartite classical NLS (cNLS) consists of a single cluster of 4-8 amino acids. Bipartite cNLS consists of two clusters of 2-3 amino acids and a 9-12 residue long proline-rich linker bridging the two clusters. Signal clusters are rich in positively charged amino acids such as...
5.8K
Nucleic Acid Structure
6.2K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
DNA Structure
DNA...
6.2K
Non-LTR Retrotransposons
11.6K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
11.6K
Leaky Scanning
5.2K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.2K


