化Hex-HexNAc分糖的碰撞诱导的解离机制
Hock-Seng Nguan1, Shang-Ting Tsai1, Chia Yen Liew1,2,3
1Institute of Atomic and Molecular Sciences, Academia Sinica, P. O. Box 23-166, Taipei 10617, Taiwan. ckni@po.iams.sinica.edu.tw.
Physical chemistry chemical physics : PCCP
|August 11, 2023
概括
区分碳水化合物异常是具有挑战性的. 碰撞诱导解离 (CID) 质谱学 (MS/MS) 揭示了银河糖-N-乙银河糖胺 (Gal-GalNAc) α和β异常体之间的结构差异,有助于寡糖类分析.
科学领域:
- 分析化学 分析化学
- 葡萄糖生物学 葡萄糖生物学
- 计算化学的计算化学
背景情况:
- 碳水化合物结构的阐明,包括异构的配置,是复杂的.
- 质谱学,特别是CID-MS/MS,对于碳水化合物分析至关重要.
- 了解解离机制是解释MS/MS数据的关键.
研究的目的:
- 为了研究银河糖-N-乙银河糖胺 (Gal-GalNAc) 和葡萄糖-N-乙糖胺 (Glc-GlcNAc) 分糖的碰撞诱导解离 (CID) 机制.
- 使用CID-MS/MS.区分这些脱糖的α-和β-异态.
- 为了将实验CID-MS/MS数据与量子化学计算相关联.
主要方法:
- 对Gal-GalNAc和Glc-GlcNAc分糖进行了碰撞诱导解离 (CID) 双重质谱 (MS/MS).
- 量子化学计算被用来研究解离路径和能量障碍.
- 同位素标记被用来验证计算发现.
主要成果:
- 离子添加物的CID-MS/MS光谱显示了Gal-GalNAc的α-和β-异常体之间的明显差异,但不是Glc-GlcNAc.
- 计算分析显示,与α-anomer相比,Gal-GalNAc的β-anomer在解离障碍中的差异较小.
- 计算结果与来自同位素标记分糖的实验数据保持一致.
结论:
- 基和N-乙基的方向影响CID解离路径.
- 在CID-MS/MS中,可以区分Gal-GalNAc分糖的α-和β-异态.
- 这项研究提供了对特定非糖类的CID机制的洞察,有助于确定寡糖类中的异构配置.
相关概念视频
SN1 Reaction: Mechanism
12.0K
Kinetic studies of ionization of a tertiary halide in a protic solvent suggest that only the substrate participates in the rate-determining step (slow step). The nucleophile is involved only after the slowest step. The SN1 reaction takes place in a multiple-step mechanism.
Firstly, the haloalkane ionizes to generate a carbocation intermediate and a halide ion. This heterolytic cleavage is highly endothermic with large activation energy. The ionization of the substrate, facilitated by a...
Firstly, the haloalkane ionizes to generate a carbocation intermediate and a halide ion. This heterolytic cleavage is highly endothermic with large activation energy. The ionization of the substrate, facilitated by a...
12.0K
Mass Spectrometry: Molecular Fragmentation Overview
3.2K
The ionization of a molecule into a molecular ion inside the mass spectrometer causes instability in the molecule's structure due to the loss of an electron. This eventually leads to the fragmentation or breaking of some bonds in the molecule. The fragmentation occurs predominantly at specific bonds to yield relatively stable fragments.
One type of fragmentation pattern is the cleavage of a single bond in the molecular ion. The cleavage leads to a radical and a cation. The cleavage can...
One type of fragmentation pattern is the cleavage of a single bond in the molecular ion. The cleavage leads to a radical and a cation. The cleavage can...
3.2K
SN1 Reaction: Stereochemistry
8.7K
This lesson provides an in-depth discussion of the stereochemical outcomes in an SN1 reaction.
In the first step of an SN1 reaction, the bond between the electrophilic carbon and the leaving group ionizes to generate the carbocation intermediate. The second step of the mechanism is the nucleophilic attack.
In the formed carbocation, the positively charged carbon is sp2 hybridized with a trigonal planar geometry. As all the three substituents lie on the same plane, a plane of symmetry for the...
In the first step of an SN1 reaction, the bond between the electrophilic carbon and the leaving group ionizes to generate the carbocation intermediate. The second step of the mechanism is the nucleophilic attack.
In the formed carbocation, the positively charged carbon is sp2 hybridized with a trigonal planar geometry. As all the three substituents lie on the same plane, a plane of symmetry for the...
8.7K
SN2 Reaction: Mechanism
14.5K
The kinetic studies of SN2 reactions suggest an essential feature of its mechanism: it is a single-step process without intermediates. Here, both the nucleophile and the substrate participate in the rate-determining step.
The presence of the more electronegative halogen in the substrate creates a polarized carbon-halide bond. The halide pulls the electron cloud generating an electrophilic center at the carbon atom. Thus, the carbon atom carries a partial positive charge while the halide has a...
The presence of the more electronegative halogen in the substrate creates a polarized carbon-halide bond. The halide pulls the electron cloud generating an electrophilic center at the carbon atom. Thus, the carbon atom carries a partial positive charge while the halide has a...
14.5K
Regioselectivity and Stereochemistry of Acid-Catalyzed Hydration
8.5K
The rate of acid-catalyzed hydration of alkenes depends on the alkene's structure, as the presence of alkyl substituents at the double bond can significantly influence the rate.
8.5K
Acid Halides to Carboxylic Acids: Hydrolysis
2.7K
Hydrolysis of acid halides is a nucleophilic acyl substitution reaction in which acid halides react with water to give carboxylic acids. The reaction occurs readily and does not require acid or a base catalyst.
As shown below, the mechanism involves a nucleophilic attack by water at the carbonyl carbon to form a tetrahedral intermediate. This is followed by the reformation of the carbon–oxygen π bond along with the departure of a halide ion. A final proton transfer step yields carboxylic...
As shown below, the mechanism involves a nucleophilic attack by water at the carbonyl carbon to form a tetrahedral intermediate. This is followed by the reformation of the carbon–oxygen π bond along with the departure of a halide ion. A final proton transfer step yields carboxylic...
2.7K


