oppHeatmap:为Omics数据提供各种类型的热图
Ze-Ning Wang1, Jun Yao1, Hang Liu1
1Department of Chemistry, Shanghai Stomatological Hospital & Institutes of Biomedical Sciences, Fudan University, Shanghai, 200433, China.
Applied biochemistry and biotechnology
|August 11, 2023
概括
oppHeatmap 是一种新的 MATLAB 工具,用于从高吞吐量 omics 数据创建多样化的热图. 它提供可定制的图形,包括层次聚类和相关性,具有灵活的数据输入和SVG输出.
科学领域:
- 生物信息学是一种生物信息学.
- 数据可视化 数据可视化
背景情况:
- 高通量omics数据需要有效的可视化.
- 热图是显示复杂生物数据的常见和首选方法.
研究的目的:
- 介绍oppHeatmap,这是一个基于MATLAB的新工具,用于生成各种定制的热图.
- 为生物学家提供一个多功能平台来可视化omics数据.
主要方法:
- 使用MATLAB AppDesigner开发,具有图形用户界面 (GUI).
- 支持多种热图类型:普通,层次聚类,TreeMaps,微板,样本/基因相关性和极地热图.
- 允许定制情节元素,如边框,字体和颜色.
主要成果:
- oppHeatmap可以从Microsoft Excel中读取数据,并直接在Excel中生成热图.
- 生成的热图可以以可扩展矢量图形 (SVG) 格式导出以进行进一步的修改.
- 该工具通过各种热图表示来促进高维的奥米克数据的可视化.
结论:
- oppHeatmap提供了一个用户友好和灵活的解决方案,用于创建定制的热图.
- 该工具增强了分析和解释高吞吐量omics数据的功能.
- 在GitHub上的可用性促进了可访问性和进一步开发.
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