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相关概念视频

Overview of Cell-Matrix Interactions01:24

Overview of Cell-Matrix Interactions

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The extracellular matrix or ECM holds cells together to form a tissue and allows the cells within the tissue to communicate. ECM comprises proteins such as fibronectin, collagen, laminin, etc. The most abundant protein in this space is collagen. Collagen fibers are interwoven with carbohydrate-containing protein molecules called proteoglycans. ECM allows cell migration and provides a structural scaffold at cell adhesion that anchors the cell when the extracellular matrix proteins interact with...
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Cell Adhesion Molecules - Types and Functions01:20

Cell Adhesion Molecules - Types and Functions

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Cell adhesion molecules (CAMs) are pivotal to multicellularity and the coordinated functioning of tissues and organ systems. They enable physical interactions between cells and provide mechanical strength to tissues. They also function as receptors for signal transmission across the plasma membrane. The CAMs are broadly classified into four families - integrins, cadherins, selectins, and immunoglobulin-like CAMs (IgCAMs).
CAM Families
The Integrin family of proteins is primarily  involved...
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Overview of Cell-Cell Junctions01:14

Overview of Cell-Cell Junctions

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The complex three-dimensional arrangement of cells in any multicellular organism is defined and maintained by interactions of cells with each other and the extracellular matrix. Cell-cell junctions are specialized structures where the multi-protein complexes on one cell interact with the multi-protein complexes on another  cell. These cell junctions are classified  into three main types based on their function — occluding, anchoring, and gap junctions.
Occluding or Tight...
25.6K
Contact-dependent Signaling01:19

Contact-dependent Signaling

44.7K
Contact-dependent signaling, as the name suggests, requires that communicating cells be in direct contact with each other. This is achieved either through receptor-ligand interactions or by specialized cytoplasmic channels that allow the flow of small molecules between cells. In animal cells, channels called gap junctions facilitate contact-dependent signaling in certain tissues, whereas, plasmodesmata perform a similar function in plants.
Gap Junctions
In animal cells, gap junctions are formed...
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Cell-surface Signaling01:21

Cell-surface Signaling

51.9K
Hormones—or any molecule that binds to a receptor, known as a ligand—that are lipid-insoluble (water-soluble) are not able to diffuse across the cell membrane. In order to be able to affect a cell without entering it, these hormones bind to receptors on the cell membrane. When a first messenger, a hormone, binds to a receptor, a signal cascade is set off, causing second messengers, proteins inside the cell, to become activated, resulting in downstream effects.
51.9K
Fibronectins Connect Cells with ECM01:25

Fibronectins Connect Cells with ECM

2.5K
Fibronectin is an adhesive glycoprotein present in the extracellular matrix of embryogenic and adult tissue. These molecules primarily aid in regulating cell motility and attachment. A fibronectin molecule is composed of two identical polypeptide chains attached to each other by a pair of disulfide bonds at the C-terminal.
Both proteoglycans and collagen are attached to fibronectin proteins, which, in turn, are attached to integrin proteins. These integrin proteins interact with transmembrane...
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相关实验视频

Updated: Jul 19, 2025

Split-BioID — Proteomic Analysis of Context-specific Protein Complexes in Their Native Cellular Environment
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Split-BioID — Proteomic Analysis of Context-specific Protein Complexes in Their Native Cellular Environment

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CCIDB:一个手工策划的细胞-细胞相互作用数据库,包含细胞上下文信息.

Jin Young Noh1,2,3, Hae In Lee1,2,3, Ji-Hye Choi1,2

  • 1Department of Physiology, Ajou University School of Medicine, Suwon 16499, Republic of Korea.

Database : the journal of biological databases and curation
|August 11, 2023
PubMed
概括

研究人员开发了一个新的细胞与细胞相互作用数据库 (CCIDB),以分析细胞和生物环境如何影响细胞与细胞相互作用 (CCI). 这种手工策划的资源为研究各种生物和临床环境中的CCI提供了关键的上下文信息.

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Silicon Microchips for Manipulating Cell-cell Interaction
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Genome-wide Protein-protein Interaction Screening by Protein-fragment Complementation Assay PCA in Living Cells
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相关实验视频

Last Updated: Jul 19, 2025

Split-BioID — Proteomic Analysis of Context-specific Protein Complexes in Their Native Cellular Environment
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Genome-wide Protein-protein Interaction Screening by Protein-fragment Complementation Assay PCA in Living Cells
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科学领域:

  • 系统生物学 系统生物学
  • 生物信息学是一种生物信息学.
  • 基因组学就是基因组学.

背景情况:

  • 细胞与细胞相互作用 (CCI) 是多细胞生物的基础.
  • 现有的CCI数据库缺乏全面的上下文信息.
  • 背景 (细胞类型,疾病) 显著影响CCI.

研究的目的:

  • 创建一个手动策划的细胞相互作用数据库 (CCIDB).
  • 将生物和临床背景纳入CCI数据中.
  • 为了促进对上下文依赖的CCI的分析.

主要方法:

  • 在七个类别中收集了38个上下文特征.
  • 从最近的272项研究中手工策划了520个CCI.
  • 综合相互作用,细胞类型,辅因子,效因子,表型,病理学和参考数据.

主要成果:

  • CCIDB版本1包含520个手动策划的CCI.
  • 每个CCI都有38个不同的上下文特征.
  • 该数据库为CCI提供了详细的生物和临床背景.

结论:

  • CCIDB为研究CCI的研究人员提供了宝贵的资源.
  • 该数据库可以分析特定上下文的CCI变更.
  • CCIDB支持单细胞测序和分子生物学领域的先进研究.