一个全面的自我抵抗基因数据库用于自然产品发现,并适用于海洋细菌基因组采矿
1College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, 30 South Puzhu Road, Jiangbei New District, Nanjing 211816, China.
International journal of molecular sciences
|August 12, 2023
概括
一个新的抗性基因数据库 (RGDB) 有助于识别微生物天然产品生物合成. 这个资源有助于通过将抗性基因与生物合成基因集群 (BGCs) 联系起来来预测生物活动.
科学领域:
- 微生物学 微生物学
- 生物化学 生化学
- 基因组学就是基因组学.
背景情况:
- 微生物天然产品生物合成与宿主自我抵抗机制有关.
- 识别耐药基因有助于理解微生物的自我防御,并预测天然产品的生物活性.
- 对大规模的基因组挖掘和天然产品注释缺乏全面的耐药性基因数据库.
研究的目的:
- 编制一个全面的抗性基因数据库 (RGDB).
- 标注具有机制和相关化学化合物的抗性基因.
- 应用RGDB来分析微生物生物合成基因集群 (BGCs) 中的抗性基因.
主要方法:
- 通过扫描CARD,MIBiG,NCBIAMR和UniProt数据库编译了RGDB.
- 使用手动修复和数据转换进行注释的耐药性基因.
- 在1390个海洋微生物组基因组中使用RGDB分析了7432个BGC.
主要成果:
- 成功识别了超过一半的分析BGCs的耐药基因.
- RGDB有助于优先考虑可能生产生物活性天然产品的BGC.
- 在大型基因组挖掘项目中证明了RGDB的实用性.
结论:
- 开发的RGDB是自然产品发现的宝贵资源.
- RGDB有助于理解微生物耐药机制,并预测天然产品的功能.
- 这个数据库支持高效的基因组挖掘新生物活性化合物.
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