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相关概念视频

Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

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Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
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Sanger Sequencing01:57

Sanger Sequencing

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DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
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Per-Unit Sequence Models01:26

Per-Unit Sequence Models

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An ideal Y-Y transformer, grounded through neutral impedances, displays per-unit sequence networks akin to those of a single-phase ideal transformer when subjected to balanced positive- or negative-sequence currents. These currents do not produce neutral currents, and their associated voltage drops.
Zero-sequence currents, which are identical in magnitude and phase, generate a neutral current, resulting in voltage drops across the neutral impedance and the low-voltage winding. If the...
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Maxam-Gilbert Sequencing01:05

Maxam-Gilbert Sequencing

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In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
Challenges of the Maxam-Gilbert Method
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相关实验视频

Updated: Jul 19, 2025

A Practical Guide to Phylogenetics for Nonexperts
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UniAligner:用于快速序列对齐的无参数框架.

Andrey V Bzikadze1, Pavel A Pevzner2

  • 1Graduate Program in Bioinformatics and Systems Biology, University of California, San Diego, La Jolla, CA, USA.

Nature methods
|August 14, 2023
PubMed
概括
此摘要是机器生成的。

一个新的算法,UniAligner,使得精确的序列比较具有挑战性的基因组区域,如中心分子. 这揭示了这些地区的快速演变和高结构变化率.

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Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
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Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine
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Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

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Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
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Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

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科学领域:

  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.
  • 进化生物学 进化生物学

背景情况:

  • 完整基因组学揭示了以前无法访问的基因组区域.
  • 分析中间体和超长串联重复 (ETR) 的变化在算法上具有挑战性.
  • 史密斯-沃特曼等经典对齐方法对于ETRs来说是不够的.

研究的目的:

  • 开发一种新的算法,用于精确比较ETRs的序列.
  • 为复杂的基因组区域解决现有对齐工具的局限性.
  • 为了研究人类中位素的突变率和结构变异.

主要方法:

  • 介绍UniAligner,一个无参数的序列对齐算法.
  • UniAligner使用了依赖序列的对齐得分,可以适应比较的序列.
  • 对于具有进化相关性的罕见子字符串匹配的优先级.

主要成果:

  • UniAligner成功地使ETRs的精确序列比较成为可能.
  • 估计人类中间体中的突变率.
  • 量化中心分子中大量重复和删除的高率.

结论:

  • 中心质体表现出极高的结构组织变化率.
  • 中介质可能是人类基因组中最快发展的区域之一.
  • UniAligner为分析复杂的基因组序列提供了一个至关重要的工具.