cyjShiny:一个cytoscape.js R闪亮的小工具用于网络可视化和分析
Augustin Luna1,2, Omar Shah3, Chris Sander1,2
1Department of Systems Biology, Harvard Medical School, Boston, MA, United States of America.
PloS one
|August 16, 2023
概括
cyjShiny是一个开源的R包,用于网络可视化. 它可以将交互式网络图嵌入到Shiny应用程序和R Markdown文档中,使用cytoscape.js.js.
科学领域:
- 生物信息学是一种生物信息学.
- 数据可视化 数据可视化
- 软件开发 软件开发
背景情况:
- 网络可视化对于理解复杂的生物数据至关重要.
- 将交互式网络可视化集成到Web应用程序中可以增强数据探索.
- 现有的工具可能缺乏与R环境的无集成.
研究的目的:
- 介绍cyjShiny,一个R包用于嵌入网络可视化.
- 为了促进基于cytoscape.js的网络图形集成到Shiny应用程序和R Markdown文档中.
- 为数据格式转换提供实用功能.
主要方法:
- cyjShiny利用了cytoscape.js JavaScript 图形库. cyjShiny使用了cytoscape.js JavaScript 图形库.
- 该软件包提供辅助功能,可以将R数据结构 (例如,data.frames) 转换成cytoscape.js兼容的格式.
- 它的设计是为了在R生态系统中使用,特别是与Shiny和R Markdown一起使用.
主要成果:
- cyjShiny成功地嵌入了交互式网络可视化.
- 该软件包简化了用于网络绘图的R数据转换过程.
- 用户可以在基于R的Web应用程序中创建动态网络表示.
结论:
- cyjShiny 增强了 R 在网络数据可视化方面的功能.
- 该方案促进了交互式生物信息学工具的开发.
- 它提供了一个用户友好的解决方案,用于将网络分析集成到R工作流中.
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