来自RNAseq分析Ficus carica中芽分化的数据集
Ilaria Marcotuli1, Stefania Lucia Giove1, Angelica Giancaspro1
1Department of Soil, Plant and Food Sciences, University of Bari "Aldo Moro", via G. Amendola 165/A, Bari 70126, Italy.
Data in brief
|August 18, 2023
概括
这项研究使用RNA测序来分析无花果品种的基因表达,确定无无花果生产的候选基因. 这项研究的重点是转录组组合和分化基因表达在partenocarpic和非partenocarpic无花果.
科学领域:
- 植物基因组学 植物基因组学
- 分子生物学分子生物学
- 农业科学 农业科学
背景情况:
- 无花果 (Ficus carica) 的水果发育涉及复杂的遗传调节.
- 了解帕塞诺卡皮的遗传基础对于无种子果实生产至关重要.
研究的目的:
- 为了执行新的转录组组合和Ficus carica的基因组注释.
- 通过差异基因表达分析识别与无无花果生产相关的候选基因.
主要方法:
- 用RNA测序 (RNA-Seq) 来进行转录组概况.
- 差异性基因表达分析对帕塞诺卡尔皮和非帕塞诺卡尔皮无花果品种进行.
主要成果:
- 实现了Ficus carica的转录组组合和注释.
- 通过差异表达分析确定了参与无无花果发育的候选基因,揭示了上下调节的基因.
结论:
- 这项研究为Ficus carica提供了宝贵的遗传资源.
- 鉴定出来的基因提供了对无花果中帕塞诺卡皮底层分子机制的洞察力,有助于无品种的繁殖努力.
相关概念视频
02:02Cis-regulatory Sequences
9.9K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.9K
03:21RNA-seq
10.1K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases.
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
10.1K