Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Reaction Mechanisms03:06

Reaction Mechanisms

26.0K
Chemical reactions often occur in a stepwise fashion, involving two or more distinct reactions taking place in a sequence. A balanced equation indicates the reacting species and the product species, but it reveals no details about how the reaction occurs at the molecular level. The reaction mechanism (or reaction path) provides details regarding the precise, step-by-step process by which a reaction occurs.
For instance, the decomposition of ozone appears to follow a mechanism with two steps:
26.0K
Coupled Reactions01:17

Coupled Reactions

7.8K
Cellular processes such as building and breaking down complex molecules occur through stepwise chemical reactions. Some of these chemical reactions are spontaneous and release energy, whereas others require energy to proceed. Cells often couple the energy-releasing reaction with the energy-requiring one to carry out important cell functions. 
Energy in adenosine triphosphate or ATP molecules is easily accessible to do work. ATP powers the majority of energy-requiring cellular reactions....
7.8K
Reaction Rate02:53

Reaction Rate

52.8K
The rate of reaction is the change in the amount of a reactant or product per unit time. Reaction rates are therefore determined by measuring the time dependence of some property that can be related to reactant or product amounts. Rates of reactions that consume or produce gaseous substances, for example, are conveniently determined by measuring changes in volume or pressure.
The mathematical representation of the change in the concentration of reactants and products, over time, is the rate...
52.8K
Reaction Quotient02:35

Reaction Quotient

48.6K
The status of a reversible reaction is conveniently assessed by evaluating its reaction quotient (Q). For a reversible reaction described by m A + n B ⇌ x C + y D, the reaction quotient is derived directly from the stoichiometry of the balanced equation as
48.6K
Support Reactions in Three Dimensions01:27

Support Reactions in Three Dimensions

992
Support reactions in three dimensions help maintain the stability and equilibrium of various structures and systems. These reactions prevent the system from translating and rotating, ensuring the design can withstand external forces and perform its intended function efficiently and safely. Some of the supports providing support reactions in three dimensions are discussed below:
Ball and Socket Joint is one of the supports allowing free rotation about any axis. This freedom of rotation is...
992
Support Reactions01:30

Support Reactions

459
A coplanar force system refers to a set of forces that all lie in the same plane and are subject to different reactions between the point of contact and the supports. Understanding how different types of supports affect coplanar forces is crucial for designing safe and reliable structures that can withstand external loads.
The purpose of the supports is to prevent the translational motion of the system by applying an equal and opposite force and to prevent the system's rotation by applying...
459

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

A standardized workflow for kinetic metabolic model curation and dissemination.

PLoS computational biology·2026
Same author

Antimony 3: Extending human-readable model definitions for SBML Level 3 Core and Packages.

bioRxiv : the preprint server for biology·2026
Same author

From FAIR to CURE: guidelines for computational models of biological systems.

NPJ systems biology and applications·2026
Same author

Evaluating the limitations of Bayesian metabolic control analysis.

PLoS computational biology·2026
Same author

Verification and reproducible curation of the BioModels repository.

PLoS computational biology·2025
Same author

A Roadmap for the Future of Systems Biology in Cancer Research.

Cancer research·2025
Same journal

The Quantum-to-Classical Transducer: A Thermodynamic and Quantum Mechanical Framework for the Emergence of Bioenergetics.

Bio Systems·2026
Same journal

Forward-backward gene expression binarization for boolean state inference over a known regulatory network.

Bio Systems·2026
Same journal

Partial-Label Metric Ceilings for Evaluating Gene Regulatory Networks Inferred from Single-Cell Foundation Models.

Bio Systems·2026
Same journal

The impedance mismatch theory: A non-equilibrium thermodynamic framework for a shared energetic stress pathway in neurodegeneration.

Bio Systems·2026
Same journal

Immune signal-status misclassification: A theoretical framework for biological status assignment and failed status resolution.

Bio Systems·2026
Same journal

Contextuality, incompatibility, and intra-system entanglement of mental markers: From cognition and decision making to medicine.

Bio Systems·2026
查看所有相关文章

相关实验视频

Updated: Jul 19, 2025

Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

9.9K

SBcoyote:一个可扩展的基于Python的反应编辑器和浏览器.

Jin Xu1, Gary Geng2, Nhan D Nguyen3

  • 1Department of Bioengineering, University of Washington, Seattle 98195, WA, USA.

Bio Systems
|August 18, 2023
PubMed
概括
此摘要是机器生成的。

SBcoyote是一个开源的生化反应观看器和编辑器. 它的Python插件API允许广泛的定制和新的功能,增强生物化学网络可视化和编辑.

关键词:
计算建模计算建模软件 软件 软件 软件 软件系统生物学 系统生物学视觉化的可视化

更多相关视频

An Open-Source, Fully Customizable 5-Choice Serial Reaction Time Task Toolbox for Automated Behavioral Training of Rodents
09:39

An Open-Source, Fully Customizable 5-Choice Serial Reaction Time Task Toolbox for Automated Behavioral Training of Rodents

Published on: January 19, 2022

4.2K
Automated Interactive Video Playback for Studies of Animal Communication
07:21

Automated Interactive Video Playback for Studies of Animal Communication

Published on: February 9, 2011

13.6K

相关实验视频

Last Updated: Jul 19, 2025

Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

9.9K
An Open-Source, Fully Customizable 5-Choice Serial Reaction Time Task Toolbox for Automated Behavioral Training of Rodents
09:39

An Open-Source, Fully Customizable 5-Choice Serial Reaction Time Task Toolbox for Automated Behavioral Training of Rodents

Published on: January 19, 2022

4.2K
Automated Interactive Video Playback for Studies of Animal Communication
07:21

Automated Interactive Video Playback for Studies of Animal Communication

Published on: February 9, 2011

13.6K

科学领域:

  • 系统生物学 系统生物学
  • 计算生物学 计算生物学
  • 生物化学 生物化学

背景情况:

  • 生物化学反应可视化和编辑工具对于系统生物学研究至关重要.
  • 现有的工具可能缺乏复杂网络分析的灵活性或可扩展性.

研究的目的:

  • 介绍SBcoyote,一个开源的,跨平台的生化反应观看器和编辑器.
  • 为了突出SBcoyote广泛的Python插件API,以增强功能和定制.

主要方法:

  • SBcoyote是用Python开发的,使用wxPython用于其图形用户界面 (GUI) 和绘图画布.
  • 该软件支持对隔间,物种和反应的可视化和编辑,具有广泛的风格化选项.
  • 一个关键的功能是Python插件API,使第三方开发人员能够扩展功能.

主要成果:

  • SBcoyote为生物化学网络提供了强大的可视化和编辑功能.
  • 该工具支持诸如别名节点,节点对齐,网络放大和交互式鸟视图等功能.
  • 包括进口/出口SBML插件,支持SBML 3级布局和染标准的互操作性.

结论:

  • SBcoyote为生物化学网络分析提供了一个灵活和可扩展的平台.
  • 插件架构,特别是SBML 3级支持,有助于与其他软件集成.
  • 开源性质和社区驱动的插件库促进了协作开发和广泛采用.