未知功能的域507 (DUF507) 的晶体结构揭示了一个新的蛋白质折叠
Cole E McKay1, Jianlin Cheng2, John J Tanner3,4
1Department of Biochemistry, University of Missouri, Columbia, MO, 65211, USA.
Scientific reports
|August 18, 2023
概括
确定了未知功能家族507蛋白 (AaDUF507) 的Aquifex aeolicus域的晶体结构,揭示了一个新的Y形α螺旋折叠. 这种独特的蛋白质结构可能具有连接结位,这表明了新的功能可能性.
科学领域:
- 结构生物学是结构生物学.
- 蛋白质结晶学 蛋白质结晶学
- 生物信息学是一种生物信息学.
背景情况:
- 未知功能 (DUF) 族群的域代表了具有未表征作用的蛋白质的很大一部分.
- Aquifex aeolicus是一种高热性细菌,提供独特蛋白质结构的来源.
研究的目的:
- 为了确定未知的功能家族507蛋白 (AaDUF507) 的Aquifex aeolicus域的高分辨率晶体结构.
- 描述AADUF507.7的结构特征和潜在的功能影响.
主要方法:
- 采用X射线晶体学,以1.9 Å分辨率确定两个空间组的结构.
- 使用AlphaFold模型的分子替代被用来解决相位问题.
- 进行了序列相似性分析和对接计算,以调查潜在的功能.
主要成果:
- AaDUF507的晶体结构显示出一个独特的Y形α螺旋,具有伪双重对称性.
- 结构分析表明内部序列重复,表明进化重复.
- 观察到与尼古丁胺类联结体一致的电子密度,暗示了潜在的功能部位.
结论:
- AaDUF507代表了一种新型的蛋白质折叠,在蛋白质数据库中没有已知的结构同类.
- 鉴定出潜在的结合位需要进一步研究蛋白质的功能.
- 这些结构数据为未来对AADUF507.7的生物化学和功能研究提供了基础.
相关概念视频
Protein Folding
118.4K
Overview
118.4K
Conservation of Protein Domains Over Different Proteins
10.9K
Protein domains are small structurally independent units that are part of a single amino acid chain. Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
10.9K
Structural Protein Function
2.8K
2.8K
Protein Organization
6.6K
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence....
The primary structure of a protein is its amino acid sequence....
6.6K
Protein and Protein Structures
10.6K
10.6K
Molecular Chaperones and Protein Folding
18.0K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
18.0K


