warpDOCK:使用云基础设施进行大规模虚拟药物发现
Daniel P McDougal1, Harinda Rajapaksha2, Jordan L Pederick1
1Institute for Photonics and Advanced Sensing, (IPAS), School of Biological Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia.
ACS omega
|August 21, 2023
概括
warpDOCK是一个基于云的虚拟药物发现的开源管道. 它可以快速,经济有效地选大量的化学图书馆,以加速识别潜在的候选药物.
科学领域:
- 计算化学是一种计算化学.
- 药物发现 药物发现
- 生物信息学是一种生物信息学.
背景情况:
- 虚拟查对于识别候选药物至关重要.
- 大规模的化学图书馆选是计算密集的.
- 云计算为复杂的计算提供可扩展的资源.
研究的目的:
- 介绍warpDOCK,一个开源管道用于虚拟小分子药物发现.
- 为了利用云基础设施进行并行对接计算.
- 为了使大规模的虚拟查可访问和具有成本效益.
主要方法:
- 开发了针对Oracle云基础设施 (OCI) 优化的warpDOCK管道.
- 实现了对数千个核心进行对接的和平行.
- 使用已有的对接软件自动化虚拟选过程.
主要成果:
- 实现了超大型化学图书馆的经济有效的采样.
- 有潜力将候选药物识别时间缩短数量级.
- 向更广泛的用户群体展示了大规模虚拟选的可访问性.
结论:
- warpDOCK显著提高了虚拟药物发现的效率和可扩展性.
- 该管道通过大规模的数据处理促进了化合物的快速识别.
- 开源可用性促进了计算药物发现的更广泛采用.
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