对病毒分类学当前状态进行批判性分析
Gustavo Caetano-Anollés1, Jean-Michel Claverie2, Arshan Nasir3
1Evolutionary Bioinformatics Laboratory, Department of Crop Sciences and C.R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, United States.
Frontiers in microbiology
|August 21, 2023
概括
病毒挑战传统的分类学,作为集成宿主和病毒的过程,而不是不同的分类学单元. 重新评估病毒分类原则对于理解它们的进化作用至关重要.
科学领域:
- 病毒学 病毒学
- 进化生物学 进化生物学
- 生物信息学是一种生物信息学.
背景情况:
- 传统的分类学在历史上先于进化理解,导致了分类方面的挑战.
- 病毒是全生物体的组成部分,影响生物群落的基因组和功能方面.
- 现有的病毒分类系统由于知识差距和技术限制而面临局限性.
研究的目的:
- 评估病毒分类的当前状态,并识别常见的谬误.
- 提出一种新的框架来理解生物组织中的病毒.
- 挑战病毒的多细胞起源并支持古老的细胞起源.
主要方法:
- 使用无对齐方法的家族遗传网络分析.
- 分子结构分析.
- 结构类基因组学分析.
主要成果:
- 病毒挑战有机性和个性,这表明它们应该被视为过程,而不是分类单元.
- 基因转移的病毒系遗传特征损害了单系和深层分类学等级.
- 结构遗传学分析支持病毒的古老细胞起源,这与多细胞起源理论相矛盾.
结论:
- 放弃病毒的深层分类学等级是必要的.
- 目前病毒的分类学单位和分类原则的有效性需要紧急重新评估.
- 将病毒视为整合宿主和病毒的过程提供了更准确的生物视角.
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