在人类二基酸酶III中确定了一个额外的金属结合点
Antonia Matić1, Filip Šupljika2, Hrvoje Brkić3,4
1Division of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička Cesta 54, 10000 Zagreb, Croatia.
International journal of molecular sciences
|August 26, 2023
概括
研究了二二酶III (DPP III) 的金属结合. 2+离子的结合频率低于2+离子,为DPP III提供了洞察力.
科学领域:
- 生物化学 生物化学
- 酶学 是一种酶学.
- 金属蛋白的化学成分
背景情况:
- 双基酶III (DPP III) 是一种独特的金属酶,参与各种生理过程.
- 由于DPP III作为单酶的作用,了解金属离子结合至关重要.
研究的目的:
- 调查DPP III中生理学相关的金属分离物 (Zn2+,Cu2+,Co2+,Mn2+) 的结合和交换.
- 为了描述催化和额外的金属结合点.
主要方法:
- 度测量用于确定催化部位结合的解离常数 (Kd).
- 异热定位热量计 (ITC) 用于额外的结合部位分析.
- 量子力学 (QM) 计算的位置亲和关系.
- 分子动力学 (MD) 模拟用于研究离子交换.
主要成果:
- 测量了Zn2+,Cu2+和CO2+与催化部位结合的Kd值.
- 确定了与另一个位点结合的Zn2+和Cu2+的Kd值.
- 在QM计算中,发现了Zn2+,Cu2+,Co2+和Mn2+在催化部位的亲和力.
- MD模拟显示,Cu2+离子在催化和抑制地点的交换频率低于Zn2+离子.
结论:
- 这项研究阐明了DPP III中金属离子的差异性结合和交换动态.
- 确定了Zn2+和Cu2+额外结合点的结构特征.
- 这些发现有助于理解DPP III的金属酶功能和调节.
更多相关视频
11:04Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
Published on: September 7, 2019
9.2K
07:54Analysis of AtHIRD11 Intrinsic Disorder and Binding Towards Metal Ions by Capillary Gel Electrophoresis and Affinity Capillary Electrophoresis
Published on: August 22, 2018
6.0K
相关概念视频
Ligand Binding and Linkage
4.8K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.8K
Allosteric Proteins-ATCase
5.8K
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
5.8K
Dipeptidyl Peptidase 4 Inhibitors
211
Dipeptidyl peptidase 4 (DPP-4) is a serine protease widely distributed in the body. It's involved in the inactivation of GLP-1 and GIP hormones, which are crucial for insulin regulation. DPP-4 inhibitors, such as sitagliptin (Januvia), saxagliptin (Onglyza), linagliptin (Tradjenta), alogliptin (Nesina), and vildagliptin (Galvus), help increase the proportion of active GLP-1, enhancing insulin secretion. These inhibitors work by competitively binding to DPP-4. This binding causes a...
211
