染色体外圆形DNA和结构变异突出了Arabidopsis表观遗传突变体中的基因组不稳定性
Panpan Zhang1,2,3, Assane Mbodj1,2, Abirami Soundiramourtty2,4
1Institut de Recherche pour le Développement (IRD), Laboratory of Plant Genome and Development, Perpignan, France.
Nature communications
|August 28, 2023
概括
从可转移元素 (TE) 获得丰富的染色体外DNA (eccDNA) 与基因组不稳定性相关. 表观遗传突变显示出高eccDNA负载,导致结构变异和植物潜在的DNA修复途径改变.
科学领域:
- 遗传学 是一个遗传学.
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 植物生物学 植物生物学
背景情况:
- 丰富的染色体外圆形DNA (eccDNA) 与可移植元素 (TE) 活性有关.
- 对eccDNA的表观遗传控制及其对基因组的影响仍未得到充分研究.
研究的目的:
- 研究表观遗传调节在控制eccDNA区间中的作用.
- 为了确定eccDNA对Arabidopsis thaliana基因组稳定性的影响.
主要方法:
- 长时间读取的eccDNA和基因组DNA的测序.
- 对缺乏DNA甲基化和转录后基因沉默的Arabidopsis thaliana突变物的分析.
主要成果:
- 检测到高负载的TE衍生的eccDNA,包括截断和仿真形式.
- 在基因组中发现了复杂的结构变异 (SVs),包括TE新插入和大串联重复.
- 在低甲基化植物和抗病基因集群中,SVs特别普遍.
结论:
- 表观遗传失调可以导致eccDNA形成的增加.
- 高的eccDNA负载可能会通过影响DNA修复通路导致基因组不稳定.
- 可能被忽视的SV与植物的表观遗传突变有关.
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