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相关概念视频

Genome Annotation and Assembly03:36

Genome Annotation and Assembly

18.9K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
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Assembly of Signaling Complexes01:30

Assembly of Signaling Complexes

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Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
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Synthetic Biology02:55

Synthetic Biology

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Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
Golden rice is a genetically modified...
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Assembly of Complex Microtubule Structures01:32

Assembly of Complex Microtubule Structures

1.9K
Complex microtubule structures are present in resting cells and in dividing cells. In resting cells, they are responsible for maintaining the cellular architecture, tracks for intracellular transport, positioning of organelles, assembly of cilia and flagella. They mediate the bipolar spindle assembly for chromosomal segregation and positioning of the cell division plate in dividing cells. The formation of microtubule complex structures depends on the cell type, cell stage, and cell function.
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Next-generation Sequencing03:00

Next-generation Sequencing

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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
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Protein Complex Assembly02:41

Protein Complex Assembly

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相关实验视频

Updated: Jul 17, 2025

Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms
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Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms

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阿里亚德尼:使用组合图表进行合成长读解卷.

Lauren Mak1,2, Dmitry Meleshko3,4, David C Danko3,4

  • 1Tri-Institutional Computational Biology & Medicine Program, Weill Cornell Medicine of Cornell University, New York, USA. lam4003@med.cornell.edu.

Genome biology
|August 28, 2023
PubMed
概括
此摘要是机器生成的。

合成长读数序列提供了高分辨率,但在读取链接方面存在困难. 一个新的算法Ariadne将这些读数解,以便更好地分析复杂的种群,如metagenomes.

关键词:
组装图表的组装图表条形码解卷解卷的方法转基因组学是指转基因组学.合成长时间读取

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Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies
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Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies
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科学领域:

  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学

背景情况:

  • 合成长读数序列 (例如,TELL-Seq,LoopSeq) 使用3'条形码连接短读数,以提高分辨率.
  • 一个关键的挑战是长片段和独特的分子标识符之间缺乏1:1的映射,这阻碍了准确的读取链接.

研究的目的:

  • 为了介绍Ariadne,一种用于解合成长读的新算法.
  • 为了从复杂的数据集中提取单个物种的读取云.

主要方法:

  • 开发Ariadne,一个基于汇编图的解卷算法.
  • 在合成长读数据集上应用Ariadne.

主要成果:

  • 阿里亚德尼通过解决链接模两可,有效地解开合成长读的复杂性.
  • 该算法有助于隔离单个物种的读取云.

结论:

  • 阿里亚德尼改进了复杂种群的分类学分类和新组合.
  • 这种方法增强了合成长读数测序在元基因组学研究中的实用性.