Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Cis-regulatory Sequences02:02

Cis-regulatory Sequences

3.0K
3.0K
Improving Translational Accuracy02:07

Improving Translational Accuracy

11.6K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
11.6K
Tagging and Fusion Proteins01:24

Tagging and Fusion Proteins

6.7K
Proteins are involved in several cellular processes and biochemical reactions. Analyzing a specific protein of interest requires it to be isolated from the other proteins in the cell. This is achieved by overexpressing the specific gene in a suitable host to produce large quantities of the target protein. A tag or label is recombined with the gene to produce a fusion protein containing the target protein and the tag. The tags on these fusion proteins can then be used for easy detection and...
6.7K
Predicting Reaction Outcomes02:24

Predicting Reaction Outcomes

8.5K
Kinetics describes the rate and path by which a reaction occurs. In contrast, thermodynamics deals with state functions and describes the properties, behavior, and components of a system. It is not concerned with the path taken by the process and cannot address the rate at which a reaction occurs. Although it does provide information about what can happen during a reaction process, it does not describe the detailed steps of what appears on an atomic or a molecular level. On the other hand,...
8.5K
Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

4.0K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
4.0K
Isothermal Processes01:21

Isothermal Processes

3.7K
A thermodynamic process that occurs at constant temperature is called an isothermal process. Heat slowly flows into the system or out of the system to maintain thermal equilibrium. Processes involving phase changes like water evaporation into steam or freezing water into ice at a constant temperature are examples of Isothermal Processes.
An ideal gas can also undergo isothermal expansion or compression.
For example, consider 1 mole of an ideal gas inside an isolated cylinder at initial volume V...
3.7K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Efficacy and Safety of Transcranial Direct Current Stimulation on Multiple Health Outcomes in Neurological Disorders: An Umbrella Review of Meta-Analyses of Randomized Controlled Trials.

Journal of integrative neuroscience·2026
Same author

USP-ddG: a unified structural paradigm with data efficacy and mixture-of-experts for predicting mutational effects on protein-protein interactions.

Bioinformatics (Oxford, England)·2026
Same author

Molecular modeling of 7-propanamide benzoxaboroles as CPSF3 inhibitors through docking-based 3D-QSAR and molecular dynamics simulations.

RSC advances·2026
Same author

Dissecting the shared genetic architecture between migraine subtypes and cardiovascular diseases: a multi-layered genomic analysis.

The journal of headache and pain·2026
Same author

Exosome-mediated transfer of NOD2 from platelets to monocytes: a novel therapeutic target for atherosclerosis.

Biochemical pharmacology·2026
Same author

Reconciling sensitivity and breathability in flexible iontronic pressure sensors <i>via</i> a hierarchical fibrous architecture.

Materials horizons·2026

相关实验视频

Updated: Jul 17, 2025

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions
06:50

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions

Published on: January 26, 2024

1.9K

IsoFrog:一个可逆跳转的马尔科夫链蒙特卡罗特征选择为预测异形函数的方法.

Yiwei Liu1,2, Changhuo Yang1,2, Hong-Dong Li1,2

  • 1School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, P.R. China.

Bioinformatics (Oxford, England)
|August 30, 2023
PubMed
概括

我们开发了IsoFrog,这是一种新的机器学习方法,通过选择相关特征来预测基因异型函数. IsoFrog通过专注于功能特定数据来提高准确性,优于现有方法.

更多相关视频

Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets
11:19

Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets

Published on: July 7, 2010

14.6K
JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
07:28

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics

Published on: October 19, 2021

3.2K

相关实验视频

Last Updated: Jul 17, 2025

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions
06:50

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions

Published on: January 26, 2024

1.9K
Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets
11:19

Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets

Published on: July 7, 2010

14.6K
JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
07:28

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics

Published on: October 19, 2021

3.2K

科学领域:

  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学
  • 基因组学就是基因组学.

背景情况:

  • 替代拼接从单个基因产生多个功能性异构体.
  • 预测异形函数对于理解基因角色至关重要.
  • 现有的机器学习方法经常在功能相关性和噪音方面扎.

研究的目的:

  • 开发一种改进的机器学习方法,用于基因异形功能预测.
  • 解决现有预测模型中不相关特征的挑战.
  • 通过结合特征选择来提高模型准确性.

主要方法:

  • 开发了IsoFrog,一种基于特征选择的方法,用于异形函数预测.
  • 使用可逆跳转马尔科夫链蒙特卡洛 (RJMCMC) 框架进行特征重要性评估.
  • 采用顺序特征选择来识别与函数相关的特征和修改的域不变部分最小平方 (diPLS) 来进行预测.

主要成果:

  • 与三个数据集中的六种最先进的方法相比,IsoFrog表现出更高的性能.
  • 基于RJMCMC的特征选择组件超过了三种传统的特征选择方法.
  • 该方法有效地选相关特征,同时消除噪音,提高预测准确度.

结论:

  • 拟议的IsoFrog方法显著改善了基因异形功能预测.
  • 功能选择是增强机器学习模型在这个领域的可行策略.
  • 预计这项工作将推进异形函数的识别,并激发新的计算方法.