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相关概念视频

Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

5.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.8K
Convergent Evolution01:54

Convergent Evolution

27.8K
Evolution shapes the features of organisms over time, ensuring that they are suited for the environments in which they live. Sometimes, selection pressure leads to the rise of similar but unrelated adaptations in organisms with no recent common ancestors, a process known as convergent evolution.
27.8K
Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

4.0K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
4.0K
Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

7.2K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
7.2K
Synteny and Evolution02:31

Synteny and Evolution

3.3K
John H. Renwick first coined the term “synteny” in 1971, which refers to the genes present on the same chromosomes, even if they are not genetically linked. The species with common ancestry tend to show conserved syntenic regions. Therefore, the concept of synteny is nowadays used to describe the evolutionary relationship between species.
Around 80 million years ago, the human and mice lineages diverged from the common ancestor. During the course of evolution, the ancestral...
3.3K
Cis-regulatory Sequences02:02

Cis-regulatory Sequences

9.9K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.9K

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相关实验视频

Updated: Jul 17, 2025

A Practical Guide to Phylogenetics for Nonexperts
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A Practical Guide to Phylogenetics for Nonexperts

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DCAlign v1.0:使用共同进化模型和知情先验来调整生物序列.

Anna Paola Muntoni1,2, Andrea Pagnani1,2,3

  • 1Italian Institute for Genomic Medicine, IRCCS Candiolo, I-10060 Candiolo (TO), Italy.

Bioinformatics (Oxford, England)
|August 30, 2023
PubMed
概括

DCAlign v1.0显著加快了序列对齐速度,通过整合一个经验之前处理插入和删除. 这种计算方法有效地处理同源序列,提高了对齐准确度并减少了处理时间.

科学领域:

  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学
  • 基因组学就是基因组学.

背景情况:

  • 多个序列对齐 (MSAs) 对于理解蛋白质进化和功能至关重要.
  • 识别保存和共同演变的残留物是准确的MSA的关键.
  • 现有的对齐方法在预处理步骤中面临着计算挑战.

研究的目的:

  • 为了引入DCAlign v1.0,一种新的对齐方法.
  • 为了满足序列对齐中预处理的计算需求.
  • 为了提高对同源序列对齐的效率.

主要方法:

  • DCAlign在同源序列中使用保护和共同进化的信号.
  • 该方法结合了经验先验的变量,代表插入和删除.
  • 在 Julia 中实现方便了可访问性和进一步开发.

主要成果:

  • DCAlign v1.0显示了整体计算时间的显著减少.
  • 经验先验有效地模拟插入和删除,提高对齐效率.
  • 该方法保持了利用保护和共同进化的信息的能力.

结论:

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Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
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Last Updated: Jul 17, 2025

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Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

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A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq

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  • DCAlign v1.0为多个序列对齐提供了一个计算高效的方法.
  • 经验先验的整合是减少处理时间的关键.
  • DCAlign为基因组和进化分析提供了一个有价值的工具.