来自AACR项目的纵向基因组和临床数据的分析和可视化GENIE生物制药协作在cBioPortal中
Ino de Bruijn1,2, Ritika Kundra1, Brooke Mastrogiacomo1
1Memorial Sloan Kettering Cancer Center, New York, New York.
Cancer research
|September 5, 2023
概括
国际癌症注册表提供了有价值的基因组和临床数据. 增强的cBioPortal功能现在可以对链接的患者数据进行交互分析,帮助癌症研究和发现.
科学领域:
- 基因组学和生物信息学
- 在瘤学瘤学.
- 数据科学数据科学数据科学
背景情况:
- 国际癌症登记处收集有价值的真实世界基因组和临床数据.
- 对这些多样化的数据集进行联合分析对研究人员构成重大挑战.
- 该项目汇总了来自19个癌症中心的数据,公开了超过13万名患者的病历.
研究的目的:
- 加强cBioPortal癌症基因组学平台,以支持链接临床基因组数据的分析.
- 为了使癌症患者的纵向临床和基因组信息的交互调查.
- 促进有关基因组变异对癌症预后和治疗敏感性的影响的发现.
主要方法:
- 对cBioPortal进行了显著的功能增强.
- 功能包括患者层面的纵向临床和基因组数据与时间表的可视化.
- 新功能允许根据治疗状态选择样本,并根据治疗方案进行生存分析.
主要成果:
- 增强的cBioPortal现在支持丰富,链接的临床基因组数据集的交互可视化和分析.
- 用户可以比较特定治疗前后的分子和临床属性.
- 生存分析可以根据个体患者的治疗方案进行.
结论:
- 改进的cBioPortal提供了一个强大的工具包,用于调查复杂的癌症临床基因组数据.
- 这些改进有助于在癌症研究中产生假设和发现.
- 该平台有效地支持从AACR项目GENIE生物制药协作和类似举措的数据的探索.
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