参与胚胎发育的长非编码RNA的功能进化趋同
Ane Olazagoitia-Garmendia1,2, Rodrigo Senovilla-Ganzo3, Fernando García-Moreno1,3,4
1University of the Basque Country, UPV-EHU, Leioa, Spain.
Communications biology
|September 5, 2023
概括
研究人员发现了功能融合的长非编码RNA (lncRNAs),缺乏序列同质性. 一只的lncRNA模仿人类的EVX1AS功能,展示了一种研究lncRNA跨物种进化和功能的新方法.
科学领域:
- 发展生物学 发展生物学
- 基因组学就是基因组学.
- 进化生物学 进化生物学
背景情况:
- 长非编码RNAs (lncRNAs) 在脊椎动物中很普遍,但由于有限的序列同质性,很难进行功能性表征.
- 在物种中识别功能性 lncRNA 对于理解保存的生物过程至关重要.
研究的目的:
- 通过非线性序列相似性和结构方法,识别参与开发的功能融合 lncRNA.
- 为了验证物种之间非同类lncRNA的保存功能.
主要方法:
- 对k-mer含量和二次结构分析进行选,以确定lncRNA的相似性.
- 在体内,体外和体内验证,包括CRISPR显示技术.
- 在人类神经上皮细胞和半脑细胞中的功能分析.
主要成果:
- 一种马达加斯加的lncRNA (类似的EVX1AS) 被确定具有类似于人类EVX1AS的k-mer含量和结构.
- 像Gecko的EVX1AS在功能上模仿人类的EVX1AS,诱导EVX1的表达独立于物种.
- 证明了非同类 lncRNAs 的功能融合.
结论:
- 非同类的lncRNAs在进化过程中可以表现出功能融合.
- 开发的方法使得在各种模型生物体中研究和操纵lncRNA功能成为可能.
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