交叉基因转换,自然选择和对应性同质化
Yixuan Yang1, Tanchumin Xu1,2, Gavin Conant1,3
1Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.
Molecular biology and evolution
|September 7, 2023
概括
间位基因转换 (IGC) 显著同质化重复的基因,特别是在teleosts和酵母. 这一由点突变驱动的过程,导致蛋白质序列同质化的速率高于先前估计的.
科学领域:
- 进化遗传学 进化遗传学
- 分子进化分子进化
- 进行比较基因组学.
背景情况:
- 基因重复是进化创新的主要驱动力.
- 由于基因复制而产生的对应基因,通常会随着时间的推移而分离.
- 突变和自然选择会影响对象差异,但它们在同质化中的作用是复杂的.
研究的目的:
- 量化由点突变和间位基因转换 (IGC) 引起的等位基因同质化的程度.
- 要区分同质化和非同质化的非同义替代.
- 为了比较不同基因组和物种的同质化率.
主要方法:
- 分析了164个重复的teleost基因.
- 归因于IGC的复制后代码子替代的估计与点突变相比.
- 基于它们对蛋白质序列的同质化作用的非同义替代物的划分.
主要成果:
- 间位基因转换 (IGC) 在teleost基因中占复制后代码子替代的中位数为7-8%.
- 在164个teleost基因组中的163个中,均质化非同义替代率高于非均质化率.
- 在14个酵母核糖体蛋白编码基因组中,同质化非同义速率超过同义速率.
结论:
- 交叉基因转换 (IGC) 是维持对应物之间序列相似性的重要力量.
- 同质化压力在不同类型的重复基因中普遍存在,包括远程生物和酵母菌.
- 这些发现挑战了关于类似进化的主要驱动因素的假设,强调了IGC在序列保护中的作用.
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