对Corynebacterium striatum的泛基因组分析:对一个被忽视的多药耐药病原体的洞察
Wedad M Nageeb1, Helal F Hetta2
1Department of Medical Microbiology and Immunology, Faculty of Medicine, Suez Canal University, Ismailia, 41111, Egypt. wedad_saleh@med.suez.edu.eg.
BMC microbiology
|September 8, 2023
概括
科里尼细菌条状体表现出越来越多的抗微生物耐药性 (AMR). 泛基因组分析显示,耐药性和毒性基因通常存在于可用基因组中,这表明了控制策略的新目标.
科学领域:
- 微生物学 微生物学
- 基因组学就是基因组学.
- 抗微生物耐药性 抗微生物耐药性
背景情况:
- 在临床环境中,Corynebacterium striatum越来越多地被分离出来.
- 许多分离物体对最后的抗微生物药物具有耐药性.
- 了解其泛基因组对于识别药物点和控制策略至关重要.
研究的目的:
- 构建和分析Corynebacterium条形细菌的泛基因组.
- 研究抗微生物耐药性 (AMR) 基因和毒性因子的分布.
- 探索基因组群岛 (GI),整体和原区域的作用.
主要方法:
- 使用C.striatum.的310个基因组序列进行泛基因组构造.
- 用Roary,PIRATE和PEPPAN工具进行的分析.
- 详细探索AMR基因,毒性因子,GI,整体和原体.
主要成果:
- 泛基因组包括5253-5857个基因,其中有2070-1899个核心基因群.
- 大多数AMR和毒性基因都位于可用基因组中.
- 鉴定了115种菌体物种,其中44个完整的菌体区域.
结论:
- C. striatum具有缓慢增长的泛基因组,基因组变异较低.
- 携带AMR和毒性因子的食原体元素是罕见的.
- 基因组群岛在调动抗生素耐药性基因方面发挥着重要作用,整体在50%的隔离物中存在.
关键词:
在Corynebacterium的抗菌耐药性方面.科里尼细菌 (Corynebacterium striatum) 是一种细菌.在Corynebacterium的毒性方面.整合公司的整合被忽视的病原体被忽视了泛基因组分析分析食物元素的原始元素更多相关视频
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