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相关概念视频

Ribosome Profiling02:24

Ribosome Profiling

Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Proteomics01:33

Proteomics

A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term proteomics...

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The Origins of Ploem's Filter Cube: A Pandora's Box.

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The reproducibility gap in graph neural network workflows for cell dynamics: A checklist-driven case study.

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Assessing the reproducibility of a bioimage analysis workflow characterising tissue flow in Drosophila.

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Modular training resources for bioimage analysis.

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相关实验视频

Updated: Jun 19, 2026

Workflow for High-content, Individual Cell Quantification of Fluorescent Markers from Universal Microscope Data, Supported by Open Source Software
09:57

Workflow for High-content, Individual Cell Quantification of Fluorescent Markers from Universal Microscope Data, Supported by Open Source Software

Published on: December 16, 2014

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CellProfiler插件 - 一个简单的图像分析平台集成容器和Python工具.

Erin Weisbart1, Callum Tromans-Coia1, Barbara Diaz-Rohrer1

  • 1Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.

Journal of microscopy
|September 10, 2023
PubMed
概括
此摘要是机器生成的。

CellProfiler插件通过新的模块和容器化工具来增强图像分析工作流程. 这种升级的存储库提高了可复制科学成像的可用性和社区贡献.

关键词:
细胞分析仪 (CellProfiler) 是一种细胞分析仪.在这里,Python是Python.图像分析图像分析插件插件插件插件插件插件.软件 软件 软件 软件 软件软件容器软件容器工作流的工作流.

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Automated Quantification and Analysis of Cell Counting Procedures Using ImageJ Plugins
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Automated Quantification and Analysis of Cell Counting Procedures Using ImageJ Plugins

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A High-throughput Cell Microarray Platform for Correlative Analysis of Cell Differentiation and Traction Forces
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相关实验视频

Last Updated: Jun 19, 2026

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09:57

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Automated Quantification and Analysis of Cell Counting Procedures Using ImageJ Plugins
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Automated Quantification and Analysis of Cell Counting Procedures Using ImageJ Plugins

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科学领域:

  • 生物图像分析分析
  • 计算生物学是一种计算生物学.
  • 科学软件开发科学软件开发

背景情况:

  • CellProfiler是一种流行的开源软件,用于可复制的生物图像分析.
  • 它的插件系统可以与外部Python工具和容器化应用程序集成.
  • 该CellProfiler-plugins存储库托管实验性和依赖性严重的模块.

研究的目的:

  • 为了呈现一个升级的CellProfiler-plugins存储库.
  • 为了演示在CellProfiler中访问容器化工具.
  • 改进文档,并增加引文/引用功能.

主要方法:

  • 开发并将新模块集成到CellProfiler-plugins存储库中.
  • 实现了访问容器化工具的实例.
  • 改进了现有文档,并增加了引用管理功能.

主要成果:

  • 现在可以使用升级的CellProfiler-plugins存储库.
  • 用户可以访问容器化工具,以扩展图像分析功能.
  • 改进的文档和引用工具使得更容易使用和贡献.

结论:

  • 增强的CellProfiler-plugins存储库降低了高级图像分析的障碍.
  • 它促进了科学软件的可复制性和社区参与.
  • 便于将各种计算工具集成到生物图像分析工作流程中.