基因表达流量分析揭示了基因表达的特定调节方式
Benjamin Martin1, David M Suter1
1Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
iScience
|September 13, 2023
概括
这项研究引入了基因表达流量分析以量化蛋白质动力学,揭示了共同的调节策略和蛋白质降解在细胞适应中的重要作用. 这种方法超越了平衡近似,以更准确地了解基因表达.
科学领域:
- 分子生物学分子生物学
- 系统生物学 系统生物学
- 生物物理学的生物物理.
背景情况:
- 蛋白质水平是由mRNA和蛋白质的合成和降解速度调节的.
- 之前的研究经常使用平衡近似,不适合动态生物系统.
- 了解基因表达步骤的定量贡献对于剖析蛋白质动态至关重要.
研究的目的:
- 引入和应用基因表达流量分析用于蛋白质表达动态的定量剖析.
- 使用这种新的方法分析已发表的转录组学和蛋白质组学数据.
- 识别不同的监管策略及其功能影响.
主要方法:
- 基因表达流量分析的发展.
- 将分析应用于现有的转录组学和蛋白质组学数据集.
- 蛋白质表达动态的定量剖析.
主要成果:
- 在具有特定功能特征的基因组中共享的独特调节方式.
- 证明蛋白质降解在蛋白质水平适应中发挥的作用比以前所认为的更为重要.
- 揭示了共享的调节策略有助于多样化的蛋白质水平反应.
结论:
- 基因表达流量分析为量化研究蛋白质动力学提供了一个强大的工具,超出了平衡假设.
- 蛋白质降解是蛋白质水平适应反应的关键因素.
- 在基因表达水平上共享的调节策略使多功能蛋白质反应成为可能,突出显示了非平衡动态的重要性.
相关概念视频
What is Gene Expression?
168.0K
Overview
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
168.0K
Structure of a Gene
12.6K
A gene is the fundamental unit of heredity. Every individual has two copies of each gene, one inherited from each parent. Although most people contain the same genes, there is a small fraction that is slightly different amongst people. A gene with a small difference in its sequence of DNA bases forms different alleles, contributing to different phenotypes.
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
12.6K
Regulation of Expression at Multiple Steps
942
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
942
Regulation of Expression Occurs at Multiple Steps
22.8K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
22.8K
Reporter Genes
11.5K
Reporter genes are a type of protein-coding gene that are often tagged to a gene of interest. Once inside a target cell, reporter genes usually produce visually identifiable characteristics like fluorescence and luminescence when expressed along with the gene of interest. Thus, reporter genes “report” the presence or absence of genes of interest in an organism, determine the gene expression pattern, or track the physical location of a DNA segment or protein in the cell.
11.5K
Constitutive and Regulated Gene Expression
42
Gene expression in prokaryotes is governed by constitutive and regulated systems, allowing cells to balance the production of essential proteins with adaptive responses to environmental changes.Constitutive Gene ExpressionConstitutive, or housekeeping, genes are continuously expressed as they encode proteins vital for fundamental cellular processes. These include enzymes for glycolysis, ribosomal components for protein synthesis, and proteins involved in DNA replication. Their constant...
42


