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相关概念视频

RNA Stability01:53

RNA Stability

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Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
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Nucleic Acid Structure01:25

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The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
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Bacterial Transcription01:53

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RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
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Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
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RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
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Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
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什么时候RNA会得到它的AlphaFold时刻?

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  • 1Institute of Biotechnology of the Czech Academy of Sciences, Prumyslova 595, CZ-252 50 Vestec, Czech Republic.

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概括

由于数据有限,开发精确的RNA结构预测方法面临着挑战. 解决数据质量,数量和先进的机器学习对于成功至关重要.

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科学领域:

  • 计算生物学 计算生物学
  • 结构生物学 结构生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • AlphaFold已经成功预测了蛋白质结构,激发了对RNA的类似努力.
  • 由于独特的RNA特性和数据限制,RNA结构预测是复杂的.

研究的目的:

  • 确定阻碍开发基于深度学习的RNA结构预测方法的关键挑战.
  • 为改善RNA结构和序列数据质量和数量提出解决方案.

主要方法:

  • 对RNA结构和序列数据集当前局限性的分析.
  • 讨论将深度学习模型 (如AlphaFold) 应用于RNA的具体挑战.
  • 探索替代数据源和机器学习方法.

主要成果:

  • 确定了现有RNA数据的关键问题:数量不足,质量差,偏见和信息缺失.
  • 强调了数据饥饿的深度学习方法对于当前的RNA数据集不适合.
  • 强调需要数据超出简单的序列对齐.

结论:

  • 准确的RNA结构预测是可以实现的,但需要克服与数据相关的重大障碍.
  • 未来的成功取决于提高数据质量和数量,利用各种数据类型,或开发新的,不那么数据密集的机器学习技术.