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相关概念视频

RNA Splicing01:32

RNA Splicing

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Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
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Alternative RNA Splicing02:18

Alternative RNA Splicing

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Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
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MicroRNAs01:22

MicroRNAs

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MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
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Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

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In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
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What is Gene Expression?01:36

What is Gene Expression?

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A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised  of nucleotides and proteins are comprised of amino acids, a mediator is required to convert the information encoded in DNA into proteins. This mediator is the messenger RNA (mRNA). mRNA copies the blueprint from DNA by a process called transcription. In eukaryotes, transcription occurs in the nucleus by complementary base-pairing with the DNA template. The mRNA is then...
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Pre-mRNA Processing: RNA Splicing01:36

Pre-mRNA Processing: RNA Splicing

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相关实验视频

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Using the E1A Minigene Tool to Study mRNA Splicing Changes
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替代拼接对编码区域内的微RNA调节产生影响.

Lena Maria Hackl1, Amit Fenn1,2, Zakaria Louadi1,2

  • 1Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9, 22607 Hamburg, Germany.

NAR genomics and bioinformatics
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概括

替代拼接通过从信使RNA (mRNA) 中潜在地去除miRNA目标部位来影响微RNA (miRNA) 调节. 这项研究证实,编码区域目标站点的转录被miRNAs更有效地调节.

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科学领域:

  • 分子生物学分子生物学
  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.

背景情况:

  • 微RNAs (miRNAs) 是转录后基因表达的关键调节者.
  • 替代拼接产生了转录多样性,可能会影响miRNA结合.
  • 了解miRNA-目标相互作用对于癌症和帕金森病等疾病至关重要.

研究的目的:

  • 调查替代拼接如何影响miRNA基因表达的调节.
  • 确定miRNA目标位点在编码和非编码区域中的作用.
  • 分析癌症和帕金森病数据集中的miRNA调节.

主要方法:

  • 在使用TarPmiR.R的mRNA上预测miRNA点.
  • 训练了线性回归模型,从转录表达中预测miRNA表达.
  • 使用带有和没有编码区域miRNA目标站点的转录进行比较的预测模型.

主要成果:

  • 在编码区域内结合具有miRNA目标位点的转录的模型显示出明显更高的预测能力.
  • 有证据表明,替代拼接可以通过排除含有目标位点的外因子来破坏miRNA结合.
  • 这种调节干扰在癌症和帕金森病数据中都被观察到.

结论:

  • 替代拼接干扰了miRNA介导的基因调节.
  • 由于替代拼接而导致的外因子跳转可以使转录对miRNA控制无反应.
  • 在编码区域内的MiRNA点位置对于有效的转录后调节至关重要.