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Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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相关实验视频

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The Terroir Concept Interpreted through Grape Berry Metabolomics and Transcriptomics
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梨子基因组学数据库 (PGDB):Pyrus spp 的一个全面的多基因组学研究平台.

Shulin Chen1, Manyi Sun2, Shaozhuo Xu1

  • 1College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, 271018, Shandong, China.

BMC plant biology
|September 14, 2023
PubMed
概括

梨子基因组学数据库 (PGDB) 为梨子研究提供了集成的多omics数据. 这种可访问的平台有助于研究人员快速检索和分析基因组和转录组数据,以进行增强的梨研究.

关键词:
数据库数据库数据库是一个数据库.基因组 基因组 基因组 基因组 基因组梨子 梨子 梨子重新排序是指重新排序.转录组 转录组就是一个转录组.

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科学领域:

  • 植物基因组学 植物基因组学
  • 生物信息学是一种生物信息学.
  • 果树研究 果树研究

背景情况:

  • 梨是一种重要的温带水果作物,研究兴趣日益增加.
  • 现有的OMIC数据的有限可访问性阻碍了梨的生物研究.

研究的目的:

  • 开发一个集中的,用户友好的平台,用于访问和分析多omics数据.
  • 促进对梨子基因组学和转录基因组学的综合研究.

主要方法:

  • 收集和整理了各种各样的omics数据,包括基因组序列,注释和转录.
  • 开发了梨基因组学数据库 (PGDB),并集成了JBrowse和BLAST等工具.
  • 实现了用户友好的模块,用于数据查询,浏览和分析.

主要成果:

  • 梨的基因组学数据库 (PGDB) 提供了一个全面的资源,多omics数据.
  • 包括基因组序列,基因组结构,功能注释,TF预测,比较基因组学和转录基因组学.
  • 提供了用于遗传学分析,批量数据下载和使用指南的工具.

结论:

  • PGDB是综合梨研究的有价值的在线资源.
  • 通过交互式模块和可视化工具促进有效的数据分析和查询.
  • 支持梨子基因组学和相关领域的先进研究.