药物MechDB:一个精心策划的药物机制数据库
Adriana Carolina Gonzalez-Cavazos1, Anna Tanska1, Michael Mayers1
1The Scripps Research Institute, Department of Integrative Structural and Computational Biology, 10550 N Torrey Pines Rd, La Jolla, CA, 92037, USA.
一个新的药物机制数据库 (DrugMechDB) 提供精选的药物机制作为知识图路径. 本资源有助于培训和评估计算药物重新定位模型,以更快地开发药物.
科学领域:
- 药理学 药理学是指药理学的学科.
- 生物信息学是一种生物信息学.
- 计算生物学 计算生物学
背景情况:
- 计算药物重新定位通过确定现有药物的新用途来加速药物开发.
- 生物医学知识图提供了通过推理链对药物重新定位的生物证据.
- 缺乏对药物机制的标准化数据库,阻碍了计算模型的培训和评估.
研究的目的:
- 介绍药物机制数据库 (DrugMechDB),这是一个手动策划的药物机制资源.
- 为评估计算药物重新定位方法提供一个基准数据集.
- 作为培训药物重新定位模型的宝贵资源.
主要方法:
- 从各种自由文本资源中对药物机制的手动策划.
- 药物机制作为知识图中的路径的表示.
- 整合14个主要生物尺度的数据.
主要成果:
- 药物MechDB包含了4,583种药物指示,有32,249种关系.
- 该数据库将药物机制描述为通过知识图的路径.
- 该资源整合了来自权威的自由文本来源的信息.
结论:
- 药物MechDB解决了对标准化药物机制数据库的需求.
- 该数据库可用于训练和评估计算药物重新定位模型.
- 药物MechDB促进了更有效和高效的药物重新定位策略.
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