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相关概念视频

Multicompartment Models: Overview01:14

Multicompartment Models: Overview

178
Multicompartment models are mathematical constructs that depict how drugs are distributed and eliminated within the body. They segment the body into several compartments, symbolizing various physiological or anatomical areas connected through drug transfer processes such as absorption, metabolism, distribution, and elimination.
These models offer a more comprehensive representation of drug behavior in the body than one-compartment models. They accommodate the complexity of drug distribution,...
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Energy Budgets00:51

Energy Budgets

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Organisms must balance energy intake with the energy required for growth, maintenance and reproduction. These trade-offs result in a variety of survivorship and reproductive strategies, including semelparity and iteroparity. Semelparous species, like annual plants, have only one reproductive episode in their lifetimes and consequently have short lifespans. Iteroparous species, by contrast, have many reproductive events during their lifetimes but have relatively few offspring. These two...
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Gibbs Free Energy02:39

Gibbs Free Energy

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One of the challenges of using the second law of thermodynamics to determine if a process is spontaneous is that it requires measurements of the entropy change for the system and the entropy change for the surroundings. An alternative approach involving a new thermodynamic property defined in terms of system properties only was introduced in the late nineteenth century by American mathematician Josiah Willard Gibbs. This new property is called the Gibbs free energy (G) (or simply the free...
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Energy Diagrams - II01:10

Energy Diagrams - II

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Energy diagrams are important to understand the dynamics of a system. The topology of an energy diagram helps illustrate the equilibrium points of the system.
The point in the energy diagram at which the system’s potential energy is the lowest is known as the local minima. The system tends to stay in this position indefinitely unless acted upon by a net force. The slope of the potential energy diagram at the local minima is zero, indicating that zero net force is acting on the system. The...
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Mechanistic Models: Compartment Models in Individual and Population Analysis01:23

Mechanistic Models: Compartment Models in Individual and Population Analysis

64
Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least...
64
Mechanistic Models: Overview of Compartment Models01:21

Mechanistic Models: Overview of Compartment Models

111
Mechanistic models, a category encompassing both physiological and compartmental modeling, differ from empirical models' approaches to incorporating known factors about the systems being modeled. Empirical models describe data with minimal assumptions, while mechanistic models aim to provide a robust description of available data by specifying assumptions and integrating known factors about the system. Compartmental analysis is a key example of a mechanistic model in pharmacokinetics and...
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BondGraphs.jl:系统生物学中的基于可组合能量的建模.

Joshua Forrest1,2,3, Vijay Rajagopal3,4,5, Michael P H Stumpf1,2,6,7

  • 1School of BioSciences, University of Melbourne, Parkville, Australia.

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|September 19, 2023
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概括

BondGraphs.jl是一个新的朱莉亚包,用于债券图形建模,用于分析物理和生物系统中的能量流的框架. 它为复杂的多物理建模提供了一种灵活且兼容的方法.

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科学领域:

  • 计算生物学 计算生物学
  • 系统工程 系统工程
  • 多物理模型建模 多物理建模

背景情况:

  • 债券图提供了一个强大的框架来建模物理系统中的能量流.
  • 这个框架本质上强制执行热力学约束.
  • 最近的研究强调了其在生物系统建模中的实用性.

研究的目的:

  • 介绍BondGraphs.jl,这是一个Julia实现的债券图表建模框架.
  • 为工程和生物学研究人员提供一个工具来建模复杂的系统.

主要方法:

  • 作为Julia包开发,BondGraphs.jl利用该语言的功能来实现高性能科学计算.
  • 该实现支持可变,分层,多尺度和多物理模型.
  • 确保与更广泛的朱莉亚科学建模生态系统的兼容性.

主要成果:

  • BondGraphs.jl提供了 Julia.中的债券图表方法的功能实现.
  • 该套件有助于创建跨不同物理领域的复杂,集成模型.
  • 证明了键图建模对生物系统的适用性.

结论:

  • BondGraphs.jl是一个有价值的,自由可用的资源,用于多物理和多尺度建模.
  • 它将纽带图的应用扩展到生物系统,增强跨学科研究.
  • 该套件与Julia生态系统无集成,促进高效的模型开发.