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相关概念视频

lncRNA - Long Non-coding RNAs02:39

lncRNA - Long Non-coding RNAs

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In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
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As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
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Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
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Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
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Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
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Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
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相关实验视频

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Author Spotlight: Impact of Intergenic Interactions on Disease-Identifying Dark Biomarkers
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在乳腺癌中划分高度转录的非编码元素景观.

Wenyong Zhu1, Hao Huang1, Wenlong Ming1

  • 1State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China.

Computational and structural biotechnology journal
|September 21, 2023
PubMed
概括

高转录的非编码元素 (HTNEs) 是细胞过程中的关键参与者. 这项研究确定了乳腺癌中数千种HTNE,揭示了它们在疾病进展和亚型分类中的关键作用.

关键词:
乳腺癌的瘤基因或瘤抑制剂.染色体的表征表征 染色体的表征共识动机分析共识动机分析高度转录的非编码元素.特定于亚型的转录过程.

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科学领域:

  • 基因组学就是基因组学.
  • 分子生物学分子生物学
  • 癌症研究 癌症研究

背景情况:

  • 高度转录的非编码元素 (HTNEs) 参与关键的细胞功能.
  • 在异常组织中HTNE的异常表达可能会影响疾病的发展.
  • 乳腺癌是一种异质性疾病,需要改进查和预后.

研究的目的:

  • 开发一个框架来识别和分析乳腺癌中的HTNE景观.
  • 调查HTNE在乳腺癌发生,进展和亚型特定过程中的作用.

主要方法:

  • 开发了一个新的HTNE识别框架.
  • 使用公共数据集系统地研究了乳腺癌患者的HTNE景观.
  • 分析了色素特征,蛋白质丰富,miRNA向和基因表达相关性.

主要成果:

  • 在乳腺癌中确定了超过一万个HTNE.
  • HTNEs表现出增强剂和长非编码RNA (lncRNA) 特性,富含RNA结合蛋白,并由miRNAs作为点.
  • 与HTNE相关的基因过度表达,与乳腺癌有很强的相关性,根据激素受体特性分类亚型.

结论:

  • 已识别的HTNE及其相关基因对乳腺癌的进展至关重要.
  • 在乳腺癌中,HTNEs与亚型特定的转录过程相关.
  • HTNE签名可以分类乳腺癌亚型,有助于预后和治疗策略.