在有机体中对基因表达的时空空间,光遗传控制
Ivano Legnini1,2, Lisa Emmenegger3, Alessandra Zappulo4,5
1Laboratory for Systems Biology of Gene Regulatory Elements, Berlin Institute for Medical Systems Biology (BIMSB), Max Delbrück Center for Molecular Medicine (MDC) in the Helmholtz Association, Berlin, Germany. ivano.legnini@fht.org.
Nature methods
|September 22, 2023
概括
科学家们使用光遗传学来控制器官中的基因表达,从而能够精确研究人类发育和疾病建模. 这种技术精确地模拟了有机体,并揭示了神经发育期间对基因调节的新见解.
科学领域:
- 干细胞生物学 干细胞生物学
- 发育生物学是发展生物学.
- 神经科学是一个神经科学.
背景情况:
- 器官对研究人类发展和疾病至关重要.
- 在有机体中控制时空基因表达仍然是一个挑战.
- 需要新的方法来精确地对有机体进行基因操纵.
研究的目的:
- 开发一种可编程的时间空间控制器官基因表达的方法.
- 通过光遗传学研究Sonic Hedgehog (SHH) 信号在人类神经发育中的作用.
- 证明将光遗传学与空间转录学相结合的实用性,用于研究有机体模式和细胞命运.
主要方法:
- 结合光遗传学与基因扰动技术用于RNA激活或淘汰.
- 利用可编程的时空模式来进行基因操纵.
- 应用空间和单细胞转录组分析来评估基因扰乱的影响.
主要成果:
- 在有机体内的可编程时空模式中成功激活或击败目标基因.
- 证明了在神经发育器官中Sonic Hedgehog (SHH) 信号的局部激活产生了刻板印象模式的器官.
- 通过空间转录组学揭示了SHH在神经发育中的调节作用的新见解.
结论:
- 光遗传学扰动为控制有机动物基因表达提供了强大的工具.
- 光遗传学和空间转录学的结合为重新编程细胞命运和研究组织模式提供了一个强大的平台.
- 这种方法有助于研究人类发育和使用有机体进行疾病建模.
相关概念视频
What is Gene Expression?
Overview
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
Combinatorial Gene Control
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
Reporter Genes
Reporter genes are a type of protein-coding gene that are often tagged to a gene of interest. Once inside a target cell, reporter genes usually produce visually identifiable characteristics like fluorescence and luminescence when expressed along with the gene of interest. Thus, reporter genes “report” the presence or absence of genes of interest in an organism, determine the gene expression pattern, or track the physical location of a DNA segment or protein in the cell.
Commonly used reporter...
Commonly used reporter...
What is Gene Expression?
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised of nucleotides and proteins are comprised of amino acids, a mediator is required to convert the information encoded in DNA into proteins. This mediator is the messenger RNA (mRNA). mRNA copies the blueprint from DNA by a process called transcription. In eukaryotes, transcription occurs in the nucleus by complementary base-pairing with the DNA template. The mRNA is then processed and...
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A gene is the fundamental unit of heredity. Every individual has two copies of each gene, one inherited from each parent. Although most people contain the same genes, there is a small fraction that is slightly different amongst people. A gene with a small difference in its sequence of DNA bases forms different alleles, contributing to different phenotypes.
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
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Gene expression in prokaryotes is governed by constitutive and regulated systems, allowing cells to balance the production of essential proteins with adaptive responses to environmental changes.Constitutive Gene ExpressionConstitutive, or housekeeping, genes are continuously expressed as they encode proteins vital for fundamental cellular processes. These include enzymes for glycolysis, ribosomal components for protein synthesis, and proteins involved in DNA replication. Their constant...


