在端粒酶中上游DNA-RNA基配对的形成和影响
Aydın Özmaldar1, Bülent Balta1
1Department of Molecular Biology and Genetics, Istanbul Technical University, Maslak, 34469, Istanbul, Turkey.
Chembiochem : a European journal of chemical biology
|September 24, 2023
概括
端粒延长涉及重复合成期间的DNA和RNA相互作用. 分子动力学揭示了RNA可以结合上游DNA,在模板转位期间保持基配对,以维护端粒.
科学领域:
- 分子生物学分子生物学
- 生物化学 生物化学
- 计算生物学 计算生物学
背景情况:
- 端粒维护对细胞稳定至关重要.
- 端粒酶通过重复合成进行端粒延长.
- 端粒酶活性涉及复杂的DNA-端粒RNA相互作用.
研究的目的:
- 为了研究端粒延长的分子机制.
- 阐明RNA-DNA相互作用在端粒酶活性中的作用.
- 了解端粒合成中的模板转位过程.
主要方法:
- 复制品交换分子动力学模拟被使用.
- 对键和基配对相互作用的分析.
- 研究了活性部位和上游区域的DNA-RNA相互作用.
主要成果:
- 端粒RNA与上游DNA形成基对,特别是第二个上游重复.
- 在重复合成结束时形成特定的键 (dG10-P442,dG11-N446).
- 模板转移涉及基对的顺序解离和重组,保持整体基配对.
结论:
- 端粒延长涉及协调双重和模板转位.
- 上游的DNA-RNA相互作用在转位过程中稳定了端粒酶复合体.
- 保存的基配对机制确保了精确的端粒重复加法.
相关概念视频
Telomeres and Telomerase
23.4K
In eukaryotic DNA replication, a single-stranded DNA fragment remains at the end of a chromosome after the removal of the final primer. This section of DNA cannot be replicated in the same manner as the rest of the strand because there is no 3’ end to which the newly synthesized DNA can attach. This non-replicated fragment results in gradual loss of the chromosomal DNA during each cell duplication. Additionally, it can induce a DNA damage response by enzymes that recognize single-stranded...
23.4K
Replication in Eukaryotes
13.9K
In eukaryotic cells, DNA replication is highly conserved and tightly regulated. Multiple linear chromosomes must be duplicated with high fidelity before cell division, so there are many proteins that fulfill specialized roles in the replication process. Replication occurs in three phases: initiation, elongation, and termination, and ends with two complete sets of chromosomes in the nucleus.
Many Proteins Orchestrate Replication at the Origin
Eukaryotic replication follows many of the same...
Many Proteins Orchestrate Replication at the Origin
Eukaryotic replication follows many of the same...
13.9K
Proofreading
6.3K
Synthesis of new DNA molecules is carried out by the enzyme DNA polymerase, which adds nucleotides on the daughter strand complementary to the template DNA strand. DNA polymerase has a higher affinity to add the correct base and ensures fidelity during DNA replication. Furthermore, it exhibits proofreading activity during replication, using an exonuclease domain that cuts off incorrect nucleotides from the nascent DNA strand.
Errors During Replication are Corrected by the DNA Polymerase...
Errors During Replication are Corrected by the DNA Polymerase...
6.3K
DNA Base Pairing
27.5K
Erwin Chargaff’s rules on DNA equivalence paved the way for the discovery of base pairing in DNA. Chargaff’s rules state that in a double-stranded DNA molecule,
27.5K
Transfer RNA Synthesis
12.0K
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
12.0K
Translesion DNA Polymerases
10.0K
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
10.0K


