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相关概念视频

From DNA to Protein03:06

From DNA to Protein

18.5K
The flow of genetic information in cells from DNA to mRNA to protein is described by the central dogma, which states that genes specify the sequence of mRNAs, which in turn specify the sequence of amino acids making up all proteins. The decoding of one molecule to another is performed by specific proteins and RNAs. Because the information stored in DNA is so central to cellular function, it makes intuitive sense that the cell would make mRNA copies of this information for protein synthesis...
18.5K
Leaky Scanning02:28

Leaky Scanning

5.2K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.2K
tRNA Activation02:26

tRNA Activation

19.3K
Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
19.3K
Improving Translational Accuracy02:07

Improving Translational Accuracy

2.6K
2.6K
Ribosome Profiling02:24

Ribosome Profiling

3.6K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.6K
Translation01:31

Translation

142.1K
Lesson: Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of...
142.1K

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相关实验视频

Updated: Jul 15, 2025

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data
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De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data

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cdsBERT - 扩展蛋白质语言模型与Codon意识

Logan Hallee1, Nikolaos Rafailidis2, Jason P Gleghorn3

  • 1Center for Bioinformatics and Computational Biology, University of Delaware.

bioRxiv : the preprint server for biology
|September 25, 2023
PubMed
概括
此摘要是机器生成的。

蛋白质语言模型 (pLMs) 现在包含了编码子信息,增强了蛋白质分析. 这种基于编码子的方法,cdsBERT,通过捕捉微妙的序列变化来改善预测.

科学领域:

  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学
  • 基因组学就是基因组学.
关键词:
人工智能的人工智能是人工智能.贝尔特 (BERT) 公司在Codon的使用中,存在偏见.报告 报告 报告机器学习是机器学习.蛋白质语言模型的模型

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Residue-specific Incorporation of Noncanonical Amino Acids into Model Proteins Using an Escherichia coli Cell-free Transcription-translation System
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Residue-specific Incorporation of Noncanonical Amino Acids into Model Proteins Using an Escherichia coli Cell-free Transcription-translation System

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Identifying Amino Acid Overproducers Using Rare-Codon-Rich Markers
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Identifying Amino Acid Overproducers Using Rare-Codon-Rich Markers

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背景情况:

  • 蛋白质语言模型 (pLMs) 分析高通量研究的蛋白质序列.
  • 的使用偏差越来越多地被认为是因为它对蛋白质结构和功能的预测能力.

结论:

  • 基于Codon的pLM提供了一种改善蛋白质结构和功能预测的新方法.
  • 未来的生物特异性编码器pLMs可以提高编码器使用忠实度.
  • 创建一个编码子pLM基础模型,并通过CDS丰富蛋白质数据库对于推进该领域至关重要.