逆转掩盖了微生物组适应性进化的贡献
Paul A Torrillo1,2, Tami D Lieberman1,2,3,4
1Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
bioRxiv : the preprint server for biology
|September 25, 2023
概括
细菌基因组的进化表明,突变的比例取决于进化距离. 我们的自适应逆转模型解释了微生物组中的这种模式,在解释长期进化数据时建议谨慎.
科学领域:
- 进化生物学 进化生物学
- 微生物基因组学 微生物基因组学
- 人口遗传学 人口遗传学
背景情况:
- 对细菌基因组进化的解释依赖于突变距离.
- 非同义词与同义词突变 () 的正常化比率通常表明净化选择,但这种解释依赖于规模.
研究的目的:
- 挑战规模依赖在值中的经典解释.
- 提出和验证一种替代模型,以了解微生物基因组中的衰变.
主要方法:
- 分析建模分析建模
- 计算机模拟的计算机模拟.
- 分析肠道微生物组数据 (特别是 * 细菌体 * 基因组)
主要成果:
- 弱净化选择的经典解释导致微生物组数据中的有问题的突变积累.
- 适应逆转模型有效地解释了观察到的衰变与现实的环境波动.
- 通过反向驱动的自适应式扫描,即使在频繁的选择中,也可以解释低值.
结论:
- 来自长进化时间尺度的低值应谨慎解释,因为它们可能是频繁的适应式扫描的结果.
- 突变逆转在随着时间的推移塑造细菌基因组景观方面发挥着重要作用.
- 在较短的时间尺度上研究细菌基因组进化对于准确的解释至关重要.
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