相关实验视频
Updated: Jul 15, 2025

09:47
Analysis of Histone Antibody Specificity with Peptide Microarrays
Published on: August 1, 2017
40.3K
通过增长来构建希斯-蛋白质复合结构
Balázs Zoltán Zsidó1, Bayartsetseg Bayarsaikhan1, Rita Börzsei1
1Pharmacoinformatics Unit, Department of Pharmacology and Pharmacotherapy, Medical School, University of Pécs, Szigeti Út 12, 7624 Pécs, Hungary.
International journal of molecular sciences
|September 28, 2023
概括
一种名为PepGrow的新方法有效地确定了基因组-阅读器复合体的原子结构. 这种技术在结合口袋内生长了组胺尾,克服了表观遗传结构确定方面的挑战.
科学领域:
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 结构生物学 结构生物学
- 计算化学的计算化学
背景情况:
- 基因组复合物对表观遗传学至关重要,但由于柔性基因组尾巴和读者蛋白之间的相互作用较弱,因此很难确定它们的结构.
- 准确的结构数据对于理解表观遗传调节和开发向疗法至关重要.
研究的目的:
- 介绍了一种新的计算协议,PepGrow,用于确定基因组-阅读器复合体的原子分辨率结构.
- 解决与素的灵活性和弱结合相互作用相关的挑战.
主要方法:
- 佩普格罗利用对接的组素片段作为种子,在读者绑定口袋中生长完整的尾.
- 结合了AutoDock用于初始片段对接和模拟器用于延伸的构建算法.
- 采用一种新的 in situ 连接生长策略.
主要成果:
- 佩普格罗成功地产生了基因组-阅读器复合体的原子分辨率结构.
- 与连接预先对接的片段相比,显示出更高的效率.
- 能够有效地处理希斯顿的固有灵活性.
结论:
- 从种子中在现场种植配体是一种可行的和高效的策略,用于生产复杂的质结构.
- PepGrow提供了一种快速有效的方法,可以获得对表观遗传机制的高分辨率结构洞察力.
相关概念视频
Protein Complex Assembly
10.6K
Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types. Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Many viruses self-assemble into a fully functional unit using the infected host cell to...
10.6K
Protein Organization
138.4K
Overview
138.4K
Protein Folding
8.1K
Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
8.1K
The Nucleosome Core Particle
936
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
936
The Nucleosome
1.7K
Human DNA is almost two meters long. However, it is compressed inside a tiny nucleus measuring only a few microns in diameter. To make this degree of compaction possible, DNA is organized into several sequential levels so that it can fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
1.7K
Nucleosome Remodeling
9.2K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.2K

