乳酸细菌多域细胞包膜蛋白酶的比较结构分析
Lise Friis Christensen1, Magnus Haraldson Høie2, Claus Heiner Bang-Berthelsen1
1National Food Institute, Technical University of Denmark, Kemitorvet, DK-2800 Kongens Lyngby, Denmark.
Microorganisms
|September 28, 2023
概括
乳酸细菌的细胞包膜蛋白酶 (CEPs) 呈现出多样化的结构和功能. 这项研究使用AlphaFold 2来预测CEP结构,揭示了与食品开发和健康相关的新型域架构.
科学领域:
- 微生物学 微生物学
- 结构生物学 结构生物学
- 生物化学 生化学
背景情况:
- 乳酸细菌 (LAB) 具有具有细胞外蛋白质溶解系统的细胞包膜蛋白酶 (CEPs),具有类似于亚素的域.
- 尽管序列相似,CEP表现出多样化的蛋白质分解活性,其结构数据以前仅限于乳制品和人类菌株.
研究的目的:
- 调查CEP在不同LAB来源的结构多样性和流行率,包括植物衍生菌株.
- 利用计算方法预测CEP结构,克服与其尺寸和细胞外附着相关的实验挑战.
主要方法:
- 雇佣AlphaFold 2,一个结构预测软件,分析21个CEP同类.
- 对预测的3D结构进行了比较分析,以界定域边界并识别新的域架构.
主要成果:
- 揭示了CEP同类的新型域架构,不仅限于特定的LAB物种或生态.
- 鉴定出不同的细胞包膜附着域和细胞壁跨越域,以及与纤维内素III型相似的C-终端域连接到蛋白酶域.
- 证明域变异影响CEP的稳定性,蛋白质分解活性和粘合性质.
结论:
- CEP的结构多样性比以前理解的更广泛,对其功能有影响.
- 了解CEP域架构为操纵蛋白质分解活性提供了在食品开发和人类健康方面的应用的潜力.
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