优化整个基因组测序条件的鸟类reoviruses的优化
Sonsiray Alvarez Narvaez1, Telvin L Harrell1, Olatunde Oluwayinka1,2
1US Department of Agriculture, Agricultural Research Service, Southeast Poultry Research Laboratory, Athens, GA 30605, USA.
Viruses
|September 28, 2023
概括
这项研究提出了一种具有成本效益的工作流程,用于对禽类再病毒 (ARV) 的全基因组测序. 结合Capto Core 700树脂,rRNA枯竭和cDNA放大,可显著丰富禽类健康研究的病毒遗传物质.
科学领域:
- 兽医病毒学 兽医病毒学
- 基因组学就是基因组学.
- 分子生物学分子生物学
背景情况:
- 禽类复原病毒 (ARV) 对家禽生产构成重大经济威胁.
- 目前的ARV全基因组测序 (WGS) 方法由于宿主遗传物质受到污染,因此效率低下.
- 开发具有成本效益的ARV基因组表征对于疾病管理至关重要.
研究的目的:
- 在下一代测序 (NGS) 之前开发和优化工作流程,以丰富禽类再病毒 (ARV) 基因组内容.
- 确定最有效的ARV净化和缩策略,以实现成本效益高的WGS.
主要方法:
- 在病毒,RNA和cDNA水平上对四种ARV丰富策略进行比较.
- 采用超离心和Capto Core 700树脂用于维净化.
- 结合本佐纳斯治疗,的rRNA耗尽,和单个原始cDNA放大.
主要成果:
- 卡普托核心700树脂,rRNA枯竭和cDNA放大的组合产生了最高比例的ARV特定读数.
- 这种综合方法被证明是通过短读测序获得完整的ARV基因组的最具成本效益的策略.
结论:
- 开发的工作流显著提高了ARV全基因组测序的效率.
- 这种方法为特征ARV分离物提供了实用和经济的解决方案,有利于家禽健康监测和研究.
更多相关视频
相关概念视频
Viral Mutations
A mutation is a change in the sequence of bases of DNA or RNA in a genome. Some mutations occur during replication of the genome due to errors made by the polymerase enzymes that replicate DNA or RNA. Unlike DNA polymerase, RNA polymerase is prone to errors because it is not capable of “proofreading” its work. Viruses with RNA-based genomes, like HIV, therefore accrue mutations faster than viruses with DNA-based genomes. Because mutation and recombination provide the raw material for adaptive...
Conservative Site-specific Recombination and Phase Variation
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
Size and Structure of Viral Genomes
Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
Viruses with RNA Genomes
RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...


