在DNA条形码中实现机器学习,以确定植物家族分类学
Lala Septem Riza1, Muhammad Iqbal Zain1, Ahmad Izzuddin1
1Department of Computer Science Education, Universitas Pendidikan Indonesia, Bandung, Indonesia.
Heliyon
|September 28, 2023
概括
这项研究使用机器学习和DNA条形码来解决植物分类学争议. 使用皮尔森方法的等级分类证实,树脂应该被归类为一个家族.
科学领域:
- 植物学 植物学
- 生物信息学是一种生物信息学.
- 机器学习 机器学习
背景情况:
- DNA 条形码对于分类学和遗传学至关重要,有助于生物的分类.
- 形态限制需要先进的方法来解决分类学争议.
- 层次聚类为分类学分类提供了一个无监督的机器学习方法.
研究的目的:
- 应用等级聚类来解决植物家族中的分类学争端.
- 调查Leguminosae家族的分类,历史上分为三个或一个.
- 在植物中确定DNA序列聚类的最佳距离方法.
主要方法:
- 从NCBI,期刊和网站收集数据.
- 应用层次聚类,一个无监督的机器学习技术.
- 使用工厂ITS序列的距离方法的验证,专注于皮尔森方法.
主要成果:
- 皮尔森方法被认为是基于准确性和计算效率对植物ITS序列集群的最有效方法.
- 使用皮尔森方法对Leguminosae案例研究进行了分层聚类分析.
- 研究结果支持将Leguminosae分类为一个单一家族.
结论:
- 机器学习,特别是使用皮尔森方法的等级聚类,有效地解决了植物分类学争议.
- 这项研究提供了强有力的证据来将Leguminosae群归类为一个家族.
- DNA 条形码与先进的计算方法相结合,可以提高分类学分辨率.
更多相关视频
相关概念视频
Evolutionary Relationships through Genome Comparisons
5.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.8K
Modern Molecular Taxonomy
43
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
43
Applications of Molecular Taxonomy
37
Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...
37
Phylogenetic Trees
45.4K
Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
45.4K
Gene Evolution - Fast or Slow?
7.2K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
7.2K


