250s循环的 conformational 开关使GH家族77的高效转糖酶化成为可能
Zhiyong Guo1,2,3,4, Lei Wang1,2,3, Deming Rao1,2,3,5
1State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, People's Republic of China.
Journal of chemical information and modeling
|September 28, 2023
概括
氨基基胺酶的形状动态
科学领域:
- 生物化学 生物化学
- 酶学 是一种酶学.
- 计算生物学 计算生物学
背景情况:
- 氨基酸酶 (AMs) 对于糖原和麦芽糖代谢至关重要.
- 控制AM活性的精确分子机制在很大程度上是未知的.
研究的目的:
- 为了阐明Thermus aquaticus amylomaltase (TaAM) 中的250s循环的结构动力学.
- 调查TaAM的催化机制,重点关注水解和转糖化反应.
主要方法:
- 利用了路径-元动力学模拟.
- 使用量子力学/分子力学 (QM/MM) 分子动力学 (MD) 模拟.
主要成果:
- 250s循环从开放型转变为封闭型,促进多糖化合物的结合和最佳的催化残留物定位.
- 闭环形状有利于转糖酶化,通过创建密集的活性位点,阻碍了水的进入.
- 部分闭环构造有利于通过松动活性部位来促进水解,从而破坏过渡状态的稳定性.
结论:
- 250s循环的 conformational 动力学批判性地调节了 TaAM 催化活性和基质选择性.
- 计算发现为有针对性的突变发生提供了基础,以提高酶的性能.
- 拟议的机制与实验数据保持一致,强调了动态在甘酸酶 (GH) 功能中的作用.
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