一种芳香药用植物Adenosma buchneroides的染色体水平参考基因组
Hui Huang1,2, Chen Wang1, Shengji Pei1
1Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
Scientific data
|September 28, 2023
概括
为芳香药用植物Adenosma buchneroides生成了一种高质量的基因组组. 这种资源有助于了解其遗传基础,进化和保护,这对其药用应用至关重要.
科学领域:
- 基因组学就是基因组学.
- 植物科学 植物科学
- 医学植物学 医学植物学
背景情况:
- Adenosma buchneroides是一种芳香的药用植物,在传统中医中使用,并作为天然驱虫剂.
- 有限的基因组数据阻碍了对这种宝贵植物的保护和分子研究.
研究的目的:
- 为了生成Adenosma buchneroides的染色体水平de novo基因组组合.
- 为遗传和进化研究提供一个基础资源.
主要方法:
- 使用先进的测序技术进行染色体水平de novo基因组组装.
- 生物信息分析包括脚手架N50计算,基因预测和功能注释.
- 使用BUSCO (基因组完整性的基因组完整性的评估) (基因组完整性的基因组完整性的评估).
主要成果:
- 获得了442.84 Mb的高质量基因组组,其中95.55%的序列分配给了14个染色体.
- 脚手架N50是27.98Mb,而BUSCO的评估表明97.2%的完整性.
- 预测了24367个编码蛋白质的基因,其中95.79%的功能注释.
结论:
- 染色体规模的Adenosma buchneroides基因组组合是一个重要的资源.
- 促进对活性成分生物合成的遗传基础和演变的理解.
- 支持进一步研究和利用Adenosma buchneroides用于医疗目的.
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