有毒牛的染色体级基因组 Kalloconus canariensis:一种有价值的模型,用于毒素学和比较基因组学
Ana Herráez-Pérez1, José Ramón Pardos-Blas1, Carlos M L Afonso2
1Departamento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales (MNCN-CSIC), José Gutiérrez Abascal 2, 28006 Madrid, Spain.
GigaScience
|September 30, 2023
概括
卡洛科努斯 (Kalloconus canariensis) 的染色体层次基因组为牛 (Conidae) 的进化和毒素提供了洞察力. 这种高质量的组件有助于研究毒素基因起源和足动物进化.
科学领域:
- 基因组学就是基因组学.
- 进化生物学 进化生物学
- 海洋生物学 海洋生物学
背景情况:
- 圆牛 (Conidae:Caenogastropoda) 拥有多种毒药,有可能用于制药.
- 了解螺的基因组进化对于毒药研究至关重要.
- 有限的基因组数据存在于形牛,阻碍了进化研究.
研究的目的:
- 为了组装Kalloconus canariensis的染色体级基因组.
- 分析基因组大小,组织和重复的元素.
- 将K. canariensis基因组与其他类物种进行比较,以获得遗传学见解.
主要方法:
- PacBio连续长时间读取序列.
- 用于基因组组装的Omni-C数据.
- 对比基因组学和遗传学分析.
主要成果:
- 为K. canariensis生成了一个2.87Gb的染色体级基因组组.
- 该基因组包含34,287个基因模型,其中55.80%的重复区域.
- 遗传学分析证实科动物是一个分类,K. canariensis和L. ventricosus是D. betulinus的姐妹.
结论:
- 卡纳虫的基因组是研究毒素基因演变的宝贵资源.
- 这种组合将有助于研究胃类动物进化中的全基因组重复事件.
- 鉴于牛及其毒素的巨大多样性,需要进行进一步的基因组研究.
相关概念视频
Evolutionary Relationships through Genome Comparisons
5.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.8K
Genomic DNA in Eukaryotes
47.0K
Eukaryotes have large genomes compared to prokaryotes. To fit their genomes into a cell, eukaryotic DNA is packaged extraordinarily tightly inside the nucleus. To achieve this, DNA is tightly wound around proteins called histones, which are packaged into nucleosomes that are joined by linker DNA and coil into chromatin fibers. Additional fibrous proteins further compact the chromatin, which is recognizable as chromosomes during certain phases of cell division.
47.0K
Multi-species Conserved Sequences
4.0K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
4.0K
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes
12.5K
The present-day mitochondrial and chloroplast genomes have retained some of the characteristics of their ancestral prokaryotes and also have acquired new attributes during their evolution within eukaryotic cells. Like prokaryotic genomes, mitochondrial and chloroplast genomes neither bind with histone-like proteins nor show complex packaging into chromosome-like structures, as observed in eukaryotes. Unlike mitotic cell divisions observed in eukaryotic cells, mitochondria and chloroplasts...
12.5K
Cis-regulatory Sequences
9.9K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.9K


