基因Ark:向100万个UCSC基因组浏览器的方向迈进
Hiram Clawson1, Brian T Lee2, Brian J Raney2
1Genomics Institute, University of California, Santa Cruz, CA, 95064, USA. hclawson@ucsc.edu.
Genome biology
|October 2, 2023
概括
基因组档案 (GenArk) 收藏提供使用UCSC基因组浏览器快速可视化最近的NCBI基因组组件. 这种资源使研究人员能够快速访问基因组数据和注释.
科学领域:
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
- 计算生物学 计算生物学
背景情况:
- 交互式图形基因组浏览器对于基因组学研究至关重要.
- 现有的浏览器往往缺乏全面和最新的基因组组件.
- 获得多样化和最新的基因组组件对于全面分析至关重要.
研究的目的:
- 为最近的NCBI基因组组装创建UCSC基因组浏览器的集合.
- 为了使基因组注释的快速和高效的可视化.
- 为整合多样化的基因组数据集提供一个平台.
主要方法:
- 使用UCSC基因浏览器框架开发了基因组档案 (GenArk) 集合.
- 利用已建立的轨道枢纽系统,以实现高效的数据集成和可视化.
- 实施了大量进口第三方资源的能力,包括基因模型和重复面具.
主要成果:
- 成功地将3,269个NCBI基因组组合集成到GenArk收藏中.
- 能够快速可视化基因模型,重复面具,BLAT对齐和in silico PCR结果.
- 证明了结合外部数据的能力,例如TOGA和Ensembl基因模型.
结论:
- GenArk显著增强了对最近的基因组组件的访问,用于可视化和分析.
- 轨道枢纽系统促进了各种基因组注释的快速整合.
- 这种资源使研究人员能够对基因组数据有更完整的了解.
相关概念视频
Genomics
36.4K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
36.4K
Evolutionary Relationships through Genome Comparisons
5.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.8K
Genomic DNA in Eukaryotes
47.0K
Eukaryotes have large genomes compared to prokaryotes. To fit their genomes into a cell, eukaryotic DNA is packaged extraordinarily tightly inside the nucleus. To achieve this, DNA is tightly wound around proteins called histones, which are packaged into nucleosomes that are joined by linker DNA and coil into chromatin fibers. Additional fibrous proteins further compact the chromatin, which is recognizable as chromosomes during certain phases of cell division.
47.0K


