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相关概念视频

Protein Organization01:24

Protein Organization

6.5K
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence....
6.5K
Protein and Protein Structure02:15

Protein and Protein Structure

79.7K
Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme...
79.7K
Protein and Protein Structures02:15

Protein and Protein Structures

10.6K
10.6K
Protein Folding01:22

Protein Folding

118.4K
Overview
118.4K
Protein Folding Quality Check in the RER01:29

Protein Folding Quality Check in the RER

3.7K
ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
3.7K
Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

10.9K
Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
10.9K

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相关实验视频

Updated: Jul 15, 2025

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

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SSDraw:用于生成比较蛋白质二次结构图的软件.

Ethan A Chen1, Lauren L Porter1,2

  • 1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894.

bioRxiv : the preprint server for biology
|October 3, 2023
PubMed
概括

SSDraw从3D结构中生成出版品质的蛋白质二次结构图. 该工具有助于比较同类蛋白质,并可视化研究的结构特征.

科学领域:

  • 结构生物学 结构生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • 蛋白质的二次结构可视化对于理解蛋白质的功能和进化至关重要.
  • 对同类蛋白质进行比较需要能够有效地对齐和显示结构特征的工具.

研究的目的:

  • 介绍SSDraw,这是一个创新的程序,用于生成出版品质的蛋白质二次结构图.
  • 为了实现对同类蛋白质中的二次结构和相关特征的可视化和比较.

主要方法:

  • SSDraw处理三维蛋白质结构以创建二级结构图.
  • 图表可以根据保护得分,B因素或自定义指标进行定制,并根据颜色编码进行定制.
  • 同类蛋白质图可以使用多个序列对齐进行对比分析来对齐.

主要成果:

  • SSDraw 便于生成详细的二次结构图.
  • 该程序允许对同类蛋白质之间的二次结构进行比较,包括那些具有保存或分离折叠的蛋白质.
  • 用户可以想象二级结构和其他蛋白质特征之间的关系.

结论:

  • SSDraw为可视化和比较蛋白质二次结构提供了一个多功能平台.
  • 该计划增强了蛋白质结构-功能关系和进化关系的分析.

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相关实验视频

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Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
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Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules

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Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
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Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins

Published on: July 8, 2025

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  • 可通过可下载的源代码和Google Colab笔记本进行访问,以方便使用.